View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_43 (Length: 251)
Name: NF1098_low_43
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_43 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 26375751 - 26375508
Alignment:
| Q |
8 |
tatcataggtcatattcattcatggcatacaagccaaaaagattgtaaagtggttgcatgcaattgtcatttggtgatatttacaactgagtttattcct |
107 |
Q |
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| T |
26375751 |
tatcctaggtcatattcattcatggcatacaagccaaaaagattgtaaagtggttgcatgcaattgtcatttggtgatatttacaactgagtttattcct |
26375652 |
T |
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| Q |
108 |
ctatataacttggtaaatttacaatcaataccacaaggatgtagacaaaccgcttaaaattaaaagcatcttattaagaatttaattgaataactaatta |
207 |
Q |
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| T |
26375651 |
ctatataacttggtaaatttacaatcaataccacaaggatgtagacaaaccgcttaaaattaaaagtatcttattaagaatttaattgaataactaatta |
26375552 |
T |
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| Q |
208 |
ctaaataaaagagtgattcaatcgtttcacgtggaaaaccaatt |
251 |
Q |
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| T |
26375551 |
ctaaataaaagtgtgattcaatcgtttcacgtggaaaaccaatt |
26375508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 26375796 - 26375753
Alignment:
| Q |
13 |
taggtcatattcattcatggcatacaagccaaaaagattgtaaa |
56 |
Q |
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| T |
26375796 |
taggtcatattcattcatggcatacaagccagaaagattttaaa |
26375753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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