View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_46 (Length: 251)

Name: NF1098_low_46
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_46
NF1098_low_46
[»] chr1 (14 HSPs)
chr1 (88-222)||(47917180-47917310)
chr1 (186-222)||(35925728-35925764)
chr1 (187-222)||(5276332-5276367)
chr1 (187-222)||(5886990-5887025)
chr1 (187-222)||(10199404-10199439)
chr1 (188-221)||(4549888-4549921)
chr1 (185-222)||(34278689-34278726)
chr1 (185-222)||(38266456-38266493)
chr1 (186-222)||(3223705-3223741)
chr1 (186-222)||(6262058-6262094)
chr1 (186-222)||(12477283-12477319)
chr1 (185-221)||(30257720-30257756)
chr1 (186-222)||(31118081-31118117)
chr1 (186-222)||(37811890-37811926)
[»] chr6 (15 HSPs)
chr6 (154-219)||(31583685-31583750)
chr6 (159-222)||(33887841-33887904)
chr6 (185-222)||(4080953-4080990)
chr6 (186-222)||(6536985-6537021)
chr6 (167-222)||(821444-821499)
chr6 (187-222)||(6647426-6647461)
chr6 (187-222)||(31624129-31624164)
chr6 (186-216)||(17241254-17241284)
chr6 (133-222)||(9667981-9668070)
chr6 (190-222)||(769180-769212)
chr6 (186-222)||(2160933-2160969)
chr6 (186-222)||(5566173-5566209)
chr6 (186-222)||(7931722-7931758)
chr6 (186-222)||(34403893-34403929)
chr6 (158-222)||(34939754-34939818)
[»] chr4 (18 HSPs)
chr4 (127-222)||(23819068-23819163)
chr4 (186-221)||(8469374-8469409)
chr4 (186-221)||(17223033-17223068)
chr4 (186-221)||(29126254-29126289)
chr4 (159-222)||(55547040-55547103)
chr4 (186-219)||(7694009-7694042)
chr4 (187-220)||(28300297-28300330)
chr4 (189-222)||(46019625-46019658)
chr4 (185-222)||(46201385-46201422)
chr4 (186-222)||(1137750-1137786)
chr4 (186-222)||(1965979-1966015)
chr4 (186-222)||(20656075-20656111)
chr4 (187-219)||(24747358-24747390)
chr4 (186-222)||(29263408-29263444)
chr4 (185-213)||(31038872-31038900)
chr4 (186-222)||(35743320-35743356)
chr4 (189-221)||(39886650-39886682)
chr4 (186-222)||(43824321-43824357)
[»] scaffold0004 (1 HSPs)
scaffold0004 (186-222)||(98636-98672)
[»] chr8 (15 HSPs)
chr8 (186-222)||(11185259-11185295)
chr8 (187-222)||(779057-779092)
chr8 (188-222)||(2594993-2595027)
chr8 (187-221)||(3600735-3600769)
chr8 (162-220)||(13410213-13410271)
chr8 (187-221)||(14339602-14339636)
chr8 (185-222)||(3254262-3254299)
chr8 (187-220)||(4281585-4281618)
chr8 (178-219)||(8255422-8255463)
chr8 (186-222)||(9835896-9835932)
chr8 (186-222)||(12361230-12361266)
chr8 (186-222)||(25869262-25869298)
chr8 (162-222)||(30191137-30191197)
chr8 (187-219)||(30389138-30389170)
chr8 (186-222)||(41606899-41606935)
[»] chr3 (15 HSPs)
chr3 (186-222)||(37273172-37273208)
chr3 (186-222)||(42745076-42745112)
chr3 (187-222)||(3044255-3044290)
chr3 (187-222)||(5391918-5391953)
chr3 (187-222)||(25925781-25925816)
chr3 (187-222)||(39602206-39602241)
chr3 (186-221)||(45432936-45432971)
chr3 (187-222)||(52440658-52440693)
chr3 (187-222)||(53762390-53762425)
chr3 (127-193)||(28306137-28306203)
chr3 (187-220)||(33883748-33883781)
chr3 (133-222)||(36646378-36646467)
chr3 (186-222)||(14598549-14598585)
chr3 (186-222)||(29771876-29771912)
chr3 (186-222)||(36200134-36200170)
[»] chr7 (11 HSPs)
chr7 (186-221)||(9423591-9423626)
chr7 (163-220)||(33894642-33894699)
chr7 (185-222)||(35267399-35267436)
chr7 (186-222)||(20888390-20888426)
chr7 (186-222)||(25511664-25511700)
chr7 (189-221)||(31180790-31180822)
chr7 (187-222)||(34035956-34035992)
chr7 (186-222)||(36598352-36598388)
chr7 (154-222)||(39568320-39568388)
chr7 (129-221)||(44151477-44151569)
chr7 (186-222)||(45078316-45078352)
[»] chr5 (5 HSPs)
chr5 (186-221)||(33533536-33533571)
chr5 (187-221)||(29281178-29281212)
chr5 (186-222)||(1899192-1899228)
chr5 (186-218)||(16457613-16457645)
chr5 (186-222)||(29590625-29590661)
[»] chr2 (14 HSPs)
chr2 (159-222)||(1939328-1939391)
chr2 (127-222)||(9878678-9878773)
chr2 (186-221)||(16867777-16867812)
chr2 (188-222)||(43910995-43911029)
chr2 (185-222)||(16947063-16947100)
chr2 (185-222)||(17017728-17017765)
chr2 (186-222)||(10285898-10285934)
chr2 (189-221)||(13234547-13234579)
chr2 (186-222)||(29316771-29316807)
chr2 (176-216)||(32615949-32615989)
chr2 (186-222)||(34652032-34652068)
chr2 (187-222)||(40682390-40682426)
chr2 (186-222)||(41809241-41809277)
chr2 (186-222)||(43827949-43827985)
[»] scaffold0286 (1 HSPs)
scaffold0286 (186-222)||(16148-16184)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 47917180 - 47917310
Alignment:
Q  88 ttttggcgtagtgcatatatataagcttatggaatcaattcaaactgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaaga 187  Q
    |||||||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47917180 ttttggcgtagtgcatata----agattatggaatcaattcaaactgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaaga 47917275  T
Q  188 aataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||||||||||||||||||    
T  47917276 aataagttgaaaacaacttatgaacatgtcataag 47917310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 35925728 - 35925764
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||| |||||||||||||||||||    
T  35925728 gaaataagttgaaaacagcttatgaacatgtcataag 35925764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 5276332 - 5276367
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||| |||||||||||||||||||||||||||||    
T  5276332 aaataacttgaaaacaacttatgaacatgtcataag 5276367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 5887025 - 5886990
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5887025 aaataagctgaaaacaacttatgaacatgtcataag 5886990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 10199439 - 10199404
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10199439 aaataagctgaaaacaacttatgaacatgtcataag 10199404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 4549888 - 4549921
Alignment:
Q  188 aataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||| |||||||||||||||||||||||||||    
T  4549888 aataagctgaaaacaacttatgaacatgtcataa 4549921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 34278726 - 34278689
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  34278726 agaaataagctgaaaacaacctatgaacatgtcataag 34278689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 38266493 - 38266456
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  38266493 agaaataagttgaaaacaaattatgaacatgtcgtaag 38266456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 3223705 - 3223741
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| |||||||||||||| |||||||||||||    
T  3223705 gaaataagctgaaaacaacttataaacatgtcataag 3223741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 6262058 - 6262094
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||| | |||||||||||||||||||    
T  6262058 gaaataagttgaaaatagcttatgaacatgtcataag 6262094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 12477319 - 12477283
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  12477319 gaaataagctgaaaacaacttatggacatgtcataag 12477283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 30257720 - 30257756
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  30257720 agaaataagctgaaaacagcttatgaacatgtcataa 30257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 31118081 - 31118117
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  31118081 gaaataagctgaaaacaactgatgaacatgtcataag 31118117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 37811890 - 37811926
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37811890 gaaataagttgaaaacagtttatgaacatgtcataag 37811926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 31583685 - 31583750
Alignment:
Q  154 ttgtgttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcat 219  Q
    |||| |||||||||||| |||||||| |||  |||||||||||||||||||||||| |||||||||    
T  31583685 ttgttttcataagctatcccgaaaagcttatggaaataagttgaaaacaacttatggacatgtcat 31583750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 33887841 - 33887904
Alignment:
Q  159 ttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||| | |||| | |||  ||||||||||||||||||||| |||||||||||||||    
T  33887841 ttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaacatgtcataag 33887904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 4080953 - 4080990
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  4080953 agaaataagttgaaaacaacttatgaacatggcataag 4080990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 6536985 - 6537021
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6536985 gaaataagctgaaaacaacttatgaacatgtcataag 6537021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 821444 - 821499
Alignment:
Q  167 ctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||| ||| || ||| ||||||||| ||||||| ||||||||||||||||||||    
T  821444 ctatactgaagaggttatagaaataagctgaaaacgacttatgaacatgtcataag 821499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 6647426 - 6647461
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  6647426 aaataagttgaaaacatcttatgaacatgtcataag 6647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 31624129 - 31624164
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  31624129 aaataagttgaaaacagcttatgaacatgtcataag 31624164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 17241284 - 17241254
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgt 216  Q
    |||||||||||||||||||||||||||||||    
T  17241284 gaaataagttgaaaacaacttatgaacatgt 17241254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 9668070 - 9667981
Alignment:
Q  133 tgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||  |||| ||||||| || |  || | || |||  ||||||||||||||||| |||||| ||||||||||||    
T  9668070 tgttttcatataagctacaatttgttttcataaactgtttcggagagcttatggaaataagttgaaaacagcttatggacatgtcataag 9667981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 769180 - 769212
Alignment:
Q  190 taagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||| |||||||||||||||||||    
T  769180 taagttgaaaacagcttatgaacatgtcataag 769212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 2160969 - 2160933
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  2160969 gaaataagttgaaaacaacttatggacatgtcgtaag 2160933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 5566209 - 5566173
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||||||| |||||| |||||    
T  5566209 gaaataagttgaaaacaacttatggacatgtaataag 5566173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 7931758 - 7931722
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  7931758 gaaataagctgaaaacaacttaagaacatgtcataag 7931722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 34403893 - 34403929
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| |||||||| |||||||||||||||||||    
T  34403893 gaaataaggtgaaaacaccttatgaacatgtcataag 34403929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 34939754 - 34939818
Alignment:
Q  158 gttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||| | | | ||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  34939754 gttcataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataag 34939818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 23819068 - 23819163
Alignment:
Q  127 tcaaactgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||| ||||| || | | ||| ||||||||||||   ||| || ||| ||||||||| ||||||||||||||| ||||||||||||    
T  23819068 tcaaactgttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataag 23819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 8469409 - 8469374
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||| |||||||||||||||||||||||||||    
T  8469409 gaaataagctgaaaacaacttatgaacatgtcataa 8469374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 17223068 - 17223033
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    ||||||||||||||||| ||||||||||||||||||    
T  17223068 gaaataagttgaaaacagcttatgaacatgtcataa 17223033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 29126289 - 29126254
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||||| |||||||||||||||||||||||||    
T  29126289 gaaataagttaaaaacaacttatgaacatgtcataa 29126254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 55547103 - 55547040
Alignment:
Q  159 ttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||| | ||||||||||  |||||||| | ||||||||||||  ||||||||||||    
T  55547103 ttcataagctatgctgaaaagtttatggaaataagctaaaaacaacttatagacatgtcataag 55547040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 7694042 - 7694009
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcat 219  Q
    |||||||| |||||||||||||||||||||||||    
T  7694042 gaaataagctgaaaacaacttatgaacatgtcat 7694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 28300330 - 28300297
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcata 220  Q
    ||||||||||||||||||||| ||||||||||||    
T  28300330 aaataagttgaaaacaacttaagaacatgtcata 28300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 46019658 - 46019625
Alignment:
Q  189 ataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||| |||||||||||||    
T  46019658 ataagttgaaaacaacttatcaacatgtcataag 46019625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 46201385 - 46201422
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  46201385 agaaataagctgaaaacaacctatgaacatgtcataag 46201422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 1137750 - 1137786
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||  ||||||||||||||||||||||||||||    
T  1137750 gaaataaactgaaaacaacttatgaacatgtcataag 1137786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 1965979 - 1966015
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||| |||||| |||||||||||||||||||    
T  1965979 gaaataagttaaaaacagcttatgaacatgtcataag 1966015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 20656075 - 20656111
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  20656075 gaaataagttgaagacaacttatggacatgtcataag 20656111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 24747358 - 24747390
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcat 219  Q
    ||||||| |||||||||||||||||||||||||    
T  24747358 aaataagctgaaaacaacttatgaacatgtcat 24747390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 29263408 - 29263444
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| |||||||||||||||||||| |||||||    
T  29263408 gaaataagctgaaaacaacttatgaacatatcataag 29263444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 31038900 - 31038872
Alignment:
Q  185 agaaataagttgaaaacaacttatgaaca 213  Q
    |||||||||||||||||||||||||||||    
T  31038900 agaaataagttgaaaacaacttatgaaca 31038872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 35743320 - 35743356
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  35743320 gaaataagttggaaacaacttataaacatgtcataag 35743356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 39886682 - 39886650
Alignment:
Q  189 ataagttgaaaacaacttatgaacatgtcataa 221  Q
    ||||||||||||||| |||||||||||||||||    
T  39886682 ataagttgaaaacaatttatgaacatgtcataa 39886650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 43824321 - 43824357
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  43824321 gaaataagctgaaaacaacttatgaacatgccataag 43824357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 98672 - 98636
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||| |||||||||||||||||||    
T  98672 gaaataagttgaaaacagcttatgaacatgtcataag 98636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 11185259 - 11185295
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||||||||||||||||| |||||    
T  11185259 gaaataagttgaaaacaacttatgaacatgttataag 11185295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 779092 - 779057
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||| ||||||||||||||||||||||||||||    
T  779092 aaataagatgaaaacaacttatgaacatgtcataag 779057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 2595027 - 2594993
Alignment:
Q  188 aataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||| ||||||||||||||||||||||||||||    
T  2595027 aataagctgaaaacaacttatgaacatgtcataag 2594993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 3600769 - 3600735
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataa 221  Q
    ||||||||||||||||||||||| |||||||||||    
T  3600769 aaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 13410271 - 13410213
Alignment:
Q  162 ataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcata 220  Q
    ||||||||||| ||| || ||| ||||||||||| |||||||||||| || ||||||||    
T  13410271 ataagctatactgaagagcttacagaaataagttaaaaacaacttataaatatgtcata 13410213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 14339636 - 14339602
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataa 221  Q
    ||||||||||||||||||||||| |||||||||||    
T  14339636 aaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 3254262 - 3254299
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  3254262 agaaataagctgaaaacagcttatgaacatgtcataag 3254299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 4281585 - 4281618
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcata 220  Q
    ||||||| ||||||||||||||||||||||||||    
T  4281585 aaataagatgaaaacaacttatgaacatgtcata 4281618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 8255422 - 8255463
Alignment:
Q  178 agtttaaagaaataagttgaaaacaacttatgaacatgtcat 219  Q
    ||||||| |||||||| ||||||||||||||| |||||||||    
T  8255422 agtttaaggaaataaggtgaaaacaacttatgcacatgtcat 8255463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 9835932 - 9835896
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| |||||||| |||||||||||||||||||    
T  9835932 gaaataagatgaaaacagcttatgaacatgtcataag 9835896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 12361230 - 12361266
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  12361230 gaaataagttgaaaacagcttatggacatgtcataag 12361266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 25869298 - 25869262
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  25869298 gaaataagctgaaaacaacttatggacatgtcataag 25869262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 30191197 - 30191137
Alignment:
Q  162 ataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||| | |||| |||||  |||||||| ||||||||| || |||||||||||||||    
T  30191197 ataagctatcctgaaatgtttatggaaataagctgaaaacaagttttgaacatgtcataag 30191137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 30389138 - 30389170
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcat 219  Q
    ||||||| |||||||||||||||||||||||||    
T  30389138 aaataagctgaaaacaacttatgaacatgtcat 30389170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 41606935 - 41606899
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| |||||||||||| |||||||||||||||    
T  41606935 gaaataagctgaaaacaacttttgaacatgtcataag 41606899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 37273172 - 37273208
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||||||| ||||||||||||    
T  37273172 gaaataagttgaaaacaacttatggacatgtcataag 37273208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 42745076 - 42745112
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42745076 gaaataagatgaaaacaacttatgaacatgtcataag 42745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 3044290 - 3044255
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  3044290 aaataagttgaaaacagcttatgaacatgtcataag 3044255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 5391918 - 5391953
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  5391918 aaataagttgaaaacagcttatgaacatgtcataag 5391953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 25925781 - 25925816
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  25925781 aaataagttgaaaacagcttatgaacatgtcataag 25925816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 39602241 - 39602206
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39602241 aaataagttgaaaacaatttatgaacatgtcataag 39602206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 45432971 - 45432936
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||| |||||||||||||||||||||||||||    
T  45432971 gaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 52440693 - 52440658
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||| |||||||||||||||||||||||||||||||    
T  52440693 aaattagttgaaaacaacttatgaacatgtcataag 52440658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 53762425 - 53762390
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  53762425 aaataagttgaaaacagcttatgaacatgtcataag 53762390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 28306137 - 28306203
Alignment:
Q  127 tcaaactgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaagaaataag 193  Q
    |||||||||||||| ||||| ||||  |||| |||||||||||||| ||| || ||| |||||||||    
T  28306137 tcaaactgttttcatataagttacaagttgttttcataagctatacagaagagcttacagaaataag 28306203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 33883781 - 33883748
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcata 220  Q
    ||||||| ||||||||||||||||||||||||||    
T  33883781 aaataagctgaaaacaacttatgaacatgtcata 33883748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 36646467 - 36646378
Alignment:
Q  133 tgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||| || | ||||| |||||||||||| |   | |||||| ||||||||| |||||||| |||||| ||||| ||||||    
T  36646467 tgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataag 36646378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 14598585 - 14598549
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  14598585 gaaataagttggaaacaacttatggacatgtcataag 14598549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 29771876 - 29771912
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  29771876 gaaataagttgaaaacaacttatggacatgtcctaag 29771912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 36200134 - 36200170
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  36200134 gaaataagctgaaaacaacttatggacatgtcataag 36200170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 9423626 - 9423591
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||| |||||||||||||||||||||||||||    
T  9423626 gaaataagctgaaaacaacttatgaacatgtcataa 9423591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 33894642 - 33894699
Alignment:
Q  163 taagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcata 220  Q
    |||||||| | | ||||||||  |||||||| ||||||||||||||| ||||||||||    
T  33894642 taagctatcctggaaagtttattgaaataagctgaaaacaacttatggacatgtcata 33894699  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 35267399 - 35267436
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  35267399 agaaataagctgaaaacaacctatgaacatgtcataag 35267436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 20888426 - 20888390
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  20888426 gaaataagctgaaaacaacttatgaacatggcataag 20888390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 25511664 - 25511700
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  25511664 gaaataagttgaagacaatttatgaacatgtcataag 25511700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 31180822 - 31180790
Alignment:
Q  189 ataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||||||||||||||||||||| ||||||    
T  31180822 ataagttgaaaacaacttatgaacatatcataa 31180790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 34035956 - 34035992
Alignment:
Q  187 aaataagttgaaaacaacttatgaac-atgtcataag 222  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34035956 aaataagttgaaaacaacttatgaacaatgtcataag 34035992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 36598388 - 36598352
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| |||||||| |||||||||||||||||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataag 36598352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 39568388 - 39568320
Alignment:
Q  154 ttgtgttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||| |||||||| ||| | || ||| ||| |||||||||  |||||||||||||| ||||||||||||    
T  39568388 ttgttttcataaggtattctgacaagcttacagaaataagccgaaaacaacttatggacatgtcataag 39568320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 44151569 - 44151477
Alignment:
Q  129 aaactgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    ||||||||| || |||||||| |  |||| ||||||| ||||   |||||| |||  |||||||| |||||||| |||||| |||||||||||    
T  44151569 aaactgtttccatataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcataa 44151477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 45078316 - 45078352
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  45078316 gaaataagttgaaaacagcttatggacatgtcataag 45078352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 33533571 - 33533536
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||||||||||||||||||||| |||||||||    
T  33533571 gaaataagttgaaaacaacttatgaatatgtcataa 33533536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 29281178 - 29281212
Alignment:
Q  187 aaataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||||||||| ||||||||||||||||||||    
T  29281178 aaataagttgaaaagaacttatgaacatgtcataa 29281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 1899192 - 1899228
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  1899192 gaaataagctgaaaacaacttatgcacatgtcataag 1899228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 16457645 - 16457613
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtca 218  Q
    |||||||| ||||||||||||||||||||||||    
T  16457645 gaaataagctgaaaacaacttatgaacatgtca 16457613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 29590661 - 29590625
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  29590661 gaaataagttgaaaacaacttatggacaagtcataag 29590625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 1939391 - 1939328
Alignment:
Q  159 ttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||| | | || |||  ||||||||||||||||| |||||| ||||||||||||    
T  1939391 ttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataag 1939328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 9878773 - 9878678
Alignment:
Q  127 tcaaactgttttcacataagctacaccttgtgttcataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||| |||| ||||| |||| |  |||| |||||  ||||| ||| | || || ||||||||||| |||||||||||||| ||||||||||||    
T  9878773 tcaaactatttttacatatgctataagttgttttcattcgctatcccggagagcttgaagaaataagtcgaaaacaacttatggacatgtcataag 9878678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 16867777 - 16867812
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataa 221  Q
    |||||||||||||||||||||||||| |||||||||    
T  16867777 gaaataagttgaaaacaacttatgaatatgtcataa 16867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 43911029 - 43910995
Alignment:
Q  188 aataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||| ||||||||||||||||||||||||||||    
T  43911029 aataagctgaaaacaacttatgaacatgtcataag 43910995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 16947063 - 16947100
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| || ||||||||||||||||||    
T  16947063 agaaataagttgaaaataatttatgaacatgtcataag 16947100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 17017728 - 17017765
Alignment:
Q  185 agaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||| || ||||||||||||||||||    
T  17017728 agaaataagttgaaaataatttatgaacatgtcataag 17017765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 10285898 - 10285934
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  10285898 gaaataagttgaaaacagcttatggacatgtcataag 10285934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 13234547 - 13234579
Alignment:
Q  189 ataagttgaaaacaacttatgaacatgtcataa 221  Q
    ||||||||||||||||||||| |||||||||||    
T  13234547 ataagttgaaaacaacttatggacatgtcataa 13234579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 29316807 - 29316771
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| |||||| |||||||||||||||||||||    
T  29316807 gaaataagctgaaaagaacttatgaacatgtcataag 29316771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 32615949 - 32615989
Alignment:
Q  176 aaagtttaaagaaataagttgaaaacaacttatgaacatgt 216  Q
    ||||||||  |||||||||||||||||||||||| ||||||    
T  32615949 aaagtttatggaaataagttgaaaacaacttatggacatgt 32615989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 34652068 - 34652032
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  34652068 gaaataagttgaaaacagcttatggacatgtcataag 34652032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 40682426 - 40682390
Alignment:
Q  187 aaataagttgaaaacaacttatgaac-atgtcataag 222  Q
    |||||||||||||||||||||||||| ||||||||||    
T  40682426 aaataagttgaaaacaacttatgaacaatgtcataag 40682390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 41809277 - 41809241
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||| | ||||||||||||||||||||||||||    
T  41809277 gaaataagctaaaaacaacttatgaacatgtcataag 41809241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 43827985 - 43827949
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  43827985 gaaataagttaaaagcaacttatgaacatgtcataag 43827949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 16148 - 16184
Alignment:
Q  186 gaaataagttgaaaacaacttatgaacatgtcataag 222  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  16148 gaaataagttgaaaacaacttatggacatgtcgtaag 16184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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