View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_48 (Length: 248)

Name: NF1098_low_48
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_48
NF1098_low_48
[»] chr6 (5 HSPs)
chr6 (11-200)||(15558785-15558979)
chr6 (121-171)||(7281162-7281212)
chr6 (121-171)||(14910407-14910457)
chr6 (92-169)||(2999492-2999569)
chr6 (91-171)||(12261971-12262051)
[»] chr7 (7 HSPs)
chr7 (121-171)||(24719035-24719085)
chr7 (115-171)||(23137363-23137419)
chr7 (121-171)||(2739803-2739853)
chr7 (96-170)||(35144409-35144483)
chr7 (90-171)||(1502249-1502330)
chr7 (91-171)||(24865173-24865253)
chr7 (103-171)||(25480456-25480524)
[»] chr2 (5 HSPs)
chr2 (92-169)||(24450626-24450703)
chr2 (122-171)||(45002691-45002740)
chr2 (104-166)||(38401756-38401818)
chr2 (121-167)||(41374313-41374359)
chr2 (127-171)||(30930060-30930104)
[»] chr8 (2 HSPs)
chr8 (72-163)||(25721471-25721562)
chr8 (121-170)||(24909862-24909911)
[»] scaffold1609 (1 HSPs)
scaffold1609 (90-171)||(443-524)
[»] chr3 (3 HSPs)
chr3 (95-171)||(20106035-20106110)
chr3 (66-173)||(35845464-35845571)
chr3 (122-171)||(27532326-27532375)
[»] chr5 (4 HSPs)
chr5 (93-176)||(17762126-17762209)
chr5 (121-171)||(24652562-24652612)
chr5 (137-173)||(3420053-3420089)
chr5 (95-175)||(41405404-41405483)
[»] chr4 (2 HSPs)
chr4 (121-171)||(25051391-25051441)
chr4 (121-171)||(37996659-37996709)
[»] chr1 (1 HSPs)
chr1 (121-171)||(50798838-50798888)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 15558979 - 15558785
Alignment:
Q  11 cagagagtacttacggaagggtgatatagctttaaaacactaaattatttgcgagttttacgtgtttatatctaggaaggcaaatttttatataccgata 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15558979 cagagagtacttaaggaagggtgatatagctttaaaacactaaattatttgcgagttttacgtgtttatatctacgaaggcaaatttttatataccgata 15558880  T
Q  111 tcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaaca-----ttagtgtttatataaatattttatcactttat 200  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||     |||||||||||||||||||||| |||||||||    
T  15558879 tcaaaagatagatatgataaaatttagaaaattcatgactgtttttaaaatatcaacattaatttagtgtttatataaatattttttcactttat 15558785  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 7281162 - 7281212
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||||||||||||| |  ||||| |||||||||||| |||||||    
T  7281162 gatatgataaaatttagaaaactcgtgactatttttaaaatataaacatta 7281212  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 14910407 - 14910457
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||||||| ||||| | |||||| |||||||| |||||||||||    
T  14910407 gatatgataaaattttgaaaactcatgactatttttaaattatcaacatta 14910457  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 2999569 - 2999492
Alignment:
Q  92 aaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacat 169  Q
    |||||||||| |||  |||| | |||| ||||||||||||||||  |||| | |||||| |||| |||||||||||||    
T  2999569 aaatttttatgtacatatatgagaaaacagatatgataaaattttaaaaagtcatgactattttcaaaatatcaacat 2999492  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 12262051 - 12261971
Alignment:
Q  91 caaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    |||||||||||||||  |||| | ||| |  |||||||| ||||| ||||| | |||||| |||| |||||||||||||||    
T  12262051 caaatttttatatacatatatgagaaagtcaatatgatagaattttgaaaactaatgactattttcaaaatatcaacatta 12261971  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 24719085 - 24719035
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  24719085 gatatgataaaattttgaaaatttatgagtatttttaaaatatcaacatta 24719035  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 23137419 - 23137363
Alignment:
Q  115 aaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||| |||||||||||||||  ||||||||||||| |||||||||||||| |||||    
T  23137419 aaaattgatatgataaaattttaaaaatttatgactatttttaaaatatcagcatta 23137363  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 2739803 - 2739853
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    |||||||||| |||| ||||| |||||||| |||| |||||||||||||||    
T  2739803 gatatgataacattttgaaaacttatgactattttcaaaatatcaacatta 2739853  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 35144483 - 35144409
Alignment:
Q  96 ttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatt 170  Q
    ||||||| | |||||| | |||||  ||||||||||||||  |||||| |||| | |||||||||||||||||||    
T  35144483 ttttatacatcgatatgagaaaattcatatgataaaattttaaaaattcatgattatttttaaaatatcaacatt 35144409  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 1502330 - 1502249
Alignment:
Q  90 gcaaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    |||||||||||| ||  ||||| ||||||| |||||||| |||||| ||||| | || ||| |||| ||||||| |||||||    
T  1502330 gcaaatttttatgtatggatatgaaaaaatcgatatgattaaattttgaaaactcatcactattttcaaaatataaacatta 1502249  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 24865173 - 24865253
Alignment:
Q  91 caaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||| ||   |||| ||||| | |||||||||||||||  |||||| |||||| |||| |||||||||| ||||    
T  24865173 caaatttttatgtagatatatgaaaaagttgatatgataaaattttaaaaattcatgactattttcaaaatatcaaaatta 24865253  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 25480456 - 25480524
Alignment:
Q  103 taccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||| | ||||| ||||| |||||||||  |||| | |||| | ||||||||||||||||||||    
T  25480456 taccgatatgagaaaatcgatataataaaattttaaaaactcatgattatttttaaaatatcaacatta 25480524  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 24450703 - 24450626
Alignment:
Q  92 aaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacat 169  Q
    |||||||||| |||  |||| | ||||| ||||||||||||||| ||||| | |||||| ||||||||||||||||||    
T  24450703 aaatttttatgtacatatatgagaaaatcgatatgataaaattttgaaaactcatgactatttttaaaatatcaacat 24450626  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 45002740 - 45002691
Alignment:
Q  122 atatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  45002740 atatgataaaattttgaaaatttatggctatttttaaaatatcaacatta 45002691  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 38401818 - 38401756
Alignment:
Q  104 accgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaa 166  Q
    |||||||| ||||| | |||||  |||||||| ||||||| |||||| |||||||||||||||    
T  38401818 accgatatgaaaaagttgatattgtaaaattttgaaaattcatgactatttttaaaatatcaa 38401756  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 41374359 - 41374313
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaac 167  Q
    ||||||||||||||| ||||| | |||||| ||||||||||||||||    
T  41374359 gatatgataaaattttgaaaagtcatgactatttttaaaatatcaac 41374313  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 30930104 - 30930060
Alignment:
Q  127 ataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||| |||||||||||||| |||| || ||||||||||||    
T  30930104 ataaaattttgaaaatttatgactattttcaacatatcaacatta 30930060  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 25721562 - 25721471
Alignment:
Q  72 gtgtttatatctaggaaggcaaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatat 163  Q
    |||||||||||||   ||| ||||||||||  |||||||| | ||| | ||||||||||||||| |||||  ||||||| ||||||||||||    
T  25721562 gtgtttatatctaaagaggtaaatttttatgcaccgatatgagaaattcgatatgataaaattttgaaaacctatgactatttttaaaatat 25721471  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 24909862 - 24909911
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatt 170  Q
    ||||||||||||| |  |||| |||||||| |||||||||||||||||||    
T  24909862 gatatgataaaatattaaaaacttatgactatttttaaaatatcaacatt 24909911  T

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Target: scaffold1609 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 524 - 443
Alignment:
Q  90 gcaaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||||||||  |||| | ||| | ||||||||||||||| ||||||   ||||| |||| |||||||||||||||    
T  524 gcaaatttttatatacatatatgagaaagttgatatgataaaattttgaaaatcagtgactattttcaaaatatcaacatta 443  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 20106110 - 20106035
Alignment:
Q  95 tttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||| ||||||||| | ||| | ||||||||||||||| ||||| ||||||||  ||| |||||||||||||||    
T  20106110 tttttatgtaccgatattagaaagtcgatatgataaaattttgaaaacttatgact-atttcaaaatatcaacatta 20106035  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 35845464 - 35845571
Alignment:
Q  66 ttttacgtgtttatatctaggaaggcaaatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatca 165  Q
    ||||| |||| ||||| || | ||| |||||||||| ||| ||||| | ||| | |||||||||||||||  |||||||| || | |||| |||||||||    
T  35845464 ttttatgtgtgtatatttacggaggtaaatttttatgtactgatataagaaagtcgatatgataaaattttaaaaatttacgattattttcaaaatatca 35845563  T
Q  166 acattagt 173  Q
    | ||||||    
T  35845564 atattagt 35845571  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 27532375 - 27532326
Alignment:
Q  122 atatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    |||||||||||||| ||||| | |||| | ||||||||||||||||||||    
T  27532375 atatgataaaattttgaaaactcatgattatttttaaaatatcaacatta 27532326  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 17762209 - 17762126
Alignment:
Q  93 aatttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacattagtgtt 176  Q
    |||||||||||||  |||| | ||| | ||||||||||||||| ||||| |  ||||| |||| ||||||||||||||| ||||    
T  17762209 aatttttatatacatatatgagaaagttgatatgataaaattttgaaaactcgtgactattttcaaaatatcaacattaatgtt 17762126  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 24652562 - 24652612
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||| |||  ||||||| ||||| ||||||||||||||||||||    
T  24652562 gatatgataaattttttaaaatttgtgactatttttaaaatatcaacatta 24652612  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 3420089 - 3420053
Alignment:
Q  137 gaaaatttatgactgtttttaaaatatcaacattagt 173  Q
    |||||||||||||| |||| |||||||||||||||||    
T  3420089 gaaaatttatgactattttcaaaatatcaacattagt 3420053  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 41405483 - 41405404
Alignment:
Q  95 tttttatataccgatatcaaaaaatagatatgataaaatttagaaaatttatgactgtttttaaaatatcaacattagtgt 175  Q
    ||||||| |||| |||| ||||  | ||||||||||||||| ||||| || ||||| ||||| ||||||| ||||||||||    
T  41405483 tttttatgtaccaatataaaaaggtcgatatgataaaattttgaaaacttgtgactattttt-aaatatctacattagtgt 41405404  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 25051441 - 25051391
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||||||| ||||| | |||| | ||||||||||||||||||||    
T  25051441 gatatgataaaattttgaaaactcatgattatttttaaaatatcaacatta 25051391  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 37996659 - 37996709
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||| ||||||||| ||||| | |||||| ||||||||||||||||||||    
T  37996659 gatataataaaattttgaaaactcatgactatttttaaaatatcaacatta 37996709  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 50798838 - 50798888
Alignment:
Q  121 gatatgataaaatttagaaaatttatgactgtttttaaaatatcaacatta 171  Q
    ||||||||||| ||| |||||||||||  | ||||||||||||||||||||    
T  50798838 gatatgataaatttttgaaaatttatggatatttttaaaatatcaacatta 50798888  T

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