View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1098_low_5 (Length: 678)
Name: NF1098_low_5
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 200 - 669
Target Start/End: Complemental strand, 31381498 - 31381029
Alignment:
| Q |
200 |
acaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgatcaat |
299 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31381498 |
acaggcagagttgttgaaagagagaggtgacctaatggagctagttgatagcagattaggttcagatttcaacaaaaaggaagctatggtgatgataaat |
31381399 |
T |
|
| Q |
300 |
gttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaatttgttt |
399 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
31381398 |
gtggctctcctatgcaccaatgacacttcaaaccttaggccgtctatgtcatcagtggtaagtatgcttgaaggaaggactgtggttccagaatttgttt |
31381299 |
T |
|
| Q |
400 |
cagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattactctcaagtgaaagaaaataaggtaagtaaccaacaaagtcggaa |
499 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||| |||| ||||||||||| |
|
|
| T |
31381298 |
cagattcaagtgaagtaatggatgaacagaaacttgaagtaatgaggcagtattactctcaaatggaaaaaaataaggtatgtaagtcacaaagtcggag |
31381199 |
T |
|
| Q |
500 |
tttatcaattgatgaccaatgtactgcttcatcttcgtcagctgtagacctttatcctgtcacaattgattcttccgaatgggatgnnnnnnnttaagag |
599 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||| ||||||| |
|
|
| T |
31381198 |
tttatcaagtgatgatcaatgtactgcttcatcttcgtcagctgtagacctttatccggtccaacttgattcttcctaatgggatgaaaaaaattaagag |
31381099 |
T |
|
| Q |
600 |
cgtgttaattctcttattaataaacatcgggataggaggaggcctagaggttcaaaatgactagtataat |
669 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31381098 |
cacgttaattctcttattaataaacatcgtgataggaggaggtctagaggttcaaaatgactagtataat |
31381029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 199 - 460
Target Start/End: Complemental strand, 31370830 - 31370569
Alignment:
| Q |
199 |
aacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgatcaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
31370830 |
aacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttcagatttcaacaaaaaggaagccatggtgatgatcaa |
31370731 |
T |
|
| Q |
299 |
tgttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaatttgtt |
398 |
Q |
| |
|
||| |||||| |||| ||||||| ||||||||| ||| |||| || |||||||| || |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
31370730 |
tgtggctctcctatgtaccaatgtcacttcaaaccttaggccttcaatgtcgtccgttgtaagtatgcttgaaggaaggactgttgttccagaatttgtt |
31370631 |
T |
|
| Q |
399 |
tcagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattactctca |
460 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
31370630 |
tcagattcaaatgaagtaatggataaacagaagttggaagtaatgaggcagtattactctca |
31370569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 199 - 458
Target Start/End: Complemental strand, 31278130 - 31277871
Alignment:
| Q |
199 |
aacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgatcaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || |
|
|
| T |
31278130 |
aacaggcacatttgttgaaagagagaggtgacctaatggagctagttgatagcagattaggttcagatttcaaaaaaaaggaagccatggtgatgataaa |
31278031 |
T |
|
| Q |
299 |
tgttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaatttgtt |
398 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
31278030 |
tgtcgctctcctatgcgccaatgacacttcaaaccttaggccgtctatgtcttcagtggtaagtatgcttgaaggaatgactgtggttccagaatttgtt |
31277931 |
T |
|
| Q |
399 |
tcagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattactct |
458 |
Q |
| |
|
||| ||||| | ||||| ||||||||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
31277930 |
tcatattcaagagaagtgatggatgaacagaagttggaaataatgaggcagtattactct |
31277871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 196 - 556
Target Start/End: Complemental strand, 31302220 - 31301854
Alignment:
| Q |
196 |
ttcaacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgat |
295 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
31302220 |
ttcaacaggcgcatttgttgaaagacagaggtgacctgatggagctagttgatagaagattaggtttagatttcgacaaaaatgaagctatggtgatgat |
31302121 |
T |
|
| Q |
296 |
caatgttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaattt |
395 |
Q |
| |
|
|||||| |||||| |||||||||| | ||||||||| ||| |||| ||||||| ||||| |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
31302120 |
caatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcctcagtcgtaagtatgcttgaaggaaggactgtggttccagaattt |
31302021 |
T |
|
| Q |
396 |
gtttcagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattactctcaagtgaaagaaaata----aggtaagtaacca--ac |
489 |
Q |
| |
|
|| ||||||||| ||||||||||||||||| |||| | |||||| ||||||||||||||| ||| || ||||||||| | |||||| || | || |
|
|
| T |
31302020 |
gtgtcagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagatggaagaaaatagtacaagtaagtcacaaacac |
31301921 |
T |
|
| Q |
490 |
aaagtcggaatttatcaattgatgaccaatgtactgcttcatcttcgtcagctgtagacctttatcc |
556 |
Q |
| |
|
|||||| || ||||| |||||||| | ||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
31301920 |
aaagtcagagtttattaattgatgggccatggactgctacatcttcatcagctgtagacctttatcc |
31301854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 199 - 531
Target Start/End: Complemental strand, 31287634 - 31287299
Alignment:
| Q |
199 |
aacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgatcaa |
298 |
Q |
| |
|
|||||||||| || ||| | ||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
31287634 |
aacaggcacaattattgcatgagagaggtgacctactggaaatagttgataaaagattaggttcagatttcaacaaaaaggaagccatggtgatgatcaa |
31287535 |
T |
|
| Q |
299 |
tgttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaatttgtt |
398 |
Q |
| |
|
||| | |||| |||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
31287534 |
tgtgggtctcctatgcaccaatgacacttcaaaccttaggccgcctatgtcttcagtggtaagtatgcttgaaggaaggactgtggttccagaatttgtt |
31287435 |
T |
|
| Q |
399 |
tcagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattactctcaagtgaaagaaaa---taaggtaagtaaccaacaaagtc |
495 |
Q |
| |
|
||||| ||| |||||| ||||||||| ||||| | ||| |||||| ||||||||||||||| | | ||||| ||||||||||| |||||||| |
|
|
| T |
31287434 |
tcagaatcaaatgaagtgatggatgaaaagaagttgcaagaaatgagtcagtattactctcaaatagatgaaaacagcaaggtaagtaagtcacaaagtc |
31287335 |
T |
|
| Q |
496 |
ggaatttatcaattgatgaccaatgtactgcttcat |
531 |
Q |
| |
|
||| |||||||||| | || |||||||||| ||||| |
|
|
| T |
31287334 |
ggagtttatcaattaaagatcaatgtactggttcat |
31287299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 200 - 476
Target Start/End: Complemental strand, 31250745 - 31250469
Alignment:
| Q |
200 |
acaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgatcaat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31250745 |
acaggcacatttgttgaaagagagaggtgacctaatggaactagttgatagaagattaggtttagatttcaacaaaaaggaagctatggtgatgatcaat |
31250646 |
T |
|
| Q |
300 |
gttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaatttgttt |
399 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||| |||| || |||||||| ||||||||||||||||| |||| || || |||||||||||||||| |
|
|
| T |
31250645 |
gttgctctcctatgcaccaacctcacttcaaaccttaggccatcgatgtcgtccgtggtaagtatgcttgaaggaaataccgtggttccagaatttgttt |
31250546 |
T |
|
| Q |
400 |
cagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattactctcaagtgaaagaaaataag |
476 |
Q |
| |
|
|||||||| |||||||||||||||| | ||| | |||| |||||| |||||||||| ||| | ||||||||||| |
|
|
| T |
31250545 |
cagattcaagtgaagtaatggatgagaaaaagttggaagcaatgagacagtattactatcagattgaagaaaataag |
31250469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 196 - 456
Target Start/End: Complemental strand, 31312713 - 31312453
Alignment:
| Q |
196 |
ttcaacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgat |
295 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
31312713 |
ttcaacaggcacaattgttgaaagagaaaggtgacctaatggagctagttgatagaagattaggtttagatttcaacaaaaaggaagccatggtgatgat |
31312614 |
T |
|
| Q |
296 |
caatgttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaattt |
395 |
Q |
| |
|
||||| |||||| |||||||||| | ||||||||| || || | ||||||||||| ||||||||||||||||| ||||| | ||| |||||||||||| |
|
|
| T |
31312613 |
gaatgtggctctcctatgcaccaacgtcacttcaaactttaggacatctatgtcgtccgtggtaagtatgcttgaaggaagaaatgtggttccagaattt |
31312514 |
T |
|
| Q |
396 |
gtttcagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattact |
456 |
Q |
| |
|
|| |||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
31312513 |
gtgccagattcaagtgaagtaatggatgaaaagaagatgaaagtaatgaggcagtattact |
31312453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 199 - 560
Target Start/End: Complemental strand, 31241828 - 31241461
Alignment:
| Q |
199 |
aacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgatcaa |
298 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241828 |
aacaggcacatttgttgaaagagaaaggtgacctgatggagttagttgatagaagattaggttcagatttcaacaaaaaggaagctatggtgatgatcaa |
31241729 |
T |
|
| Q |
299 |
tgttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaatttgtt |
398 |
Q |
| |
|
|| |||||| |||| ||||| | ||||||||| ||| |||| | |||||||| || |||||||||||||| |||| || || ||||||||||||||| |
|
|
| T |
31241728 |
cgtggctctcctatgtaccaacgtcacttcaaaccttaggccccccatgtcgtcggttgtaagtatgcttgaaggaaataccgtggttccagaatttgtt |
31241629 |
T |
|
| Q |
399 |
tcagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattactctcaagtgaaagaaaataaggtaagt-aacca-----acaaa |
492 |
Q |
| |
|
||||||||| |||||||||||||||| | ||| | |||| |||||| ||||||| | ||| | ||||||||||| ||||| || || ||||| |
|
|
| T |
31241628 |
tcagattcaagtgaagtaatggatgagaaaaagttggaagcaatgagaaagtattattatcagattgaagaaaataagataagtaaaacacaaacacaaa |
31241529 |
T |
|
| Q |
493 |
gtcggaatttatcaattgatgaccaatgtactgcttcatcttcgtcagctgtagacctttatcctgtc |
560 |
Q |
| |
|
||| |||||||| || ||||| ||||| |||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
31241528 |
gtcagaatttattaactgatgggcaatggactgcttcatcttcatcagctagagatctttatcctgtc |
31241461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 196 - 456
Target Start/End: Complemental strand, 31352729 - 31352469
Alignment:
| Q |
196 |
ttcaacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaggaagctatggtgatgat |
295 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
31352729 |
ttcaacaggcacatatgttgaaagagaaaggtgacctaatggagctagttgatggaagattaggtttagatttaaacaaaaaggaagccatggtgatgat |
31352630 |
T |
|
| Q |
296 |
caatgttgctctcttatgcaccaatgacacttcaaatcttcggccgtctatgtcgtcagtggtaagtatgcttgatggaaggactgtcgttccagaattt |
395 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||||| ||| |||| |||||||||||||| |||||||||||||| ||||| || || |||||||||||| |
|
|
| T |
31352629 |
caatgtggctctcctatgcaccaatgtcacttcaaaccttaggccctctatgtcgtcagttgtaagtatgcttgaaggaagaaccgtggttccagaattt |
31352530 |
T |
|
| Q |
396 |
gtttcagattcaggtgaagtaatggatgaacagaagcttgaagtaatgaggcagtattact |
456 |
Q |
| |
|
|| |||||||| || |||||||||||| | ||| | |||| |||||| |||||||||| |
|
|
| T |
31352529 |
gtgccagattcaagtaaagtaatggatggcaataagatggaagaaatgagacagtattact |
31352469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 31381625 - 31381552
Alignment:
| Q |
41 |
atctaagtgaccttctagtgaaatcattttgttttttagttatttaatataaatatgaccaatttcatactttg |
114 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
31381625 |
atctaagtgacattctagtgactacattttattttttagttatttaatataaatatgacctatttcgtactttg |
31381552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 31176603 - 31176551
Alignment:
| Q |
264 |
gatttcaacaaaaaggaagctatggtgatgatcaatgttgctctcttatgcac |
316 |
Q |
| |
|
|||||||||||| ||||||| ||| | ||||||||||| ||||| |||||||| |
|
|
| T |
31176603 |
gatttcaacaaagaggaagcgatgatcatgatcaatgtagctcttttatgcac |
31176551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 31187898 - 31187846
Alignment:
| Q |
264 |
gatttcaacaaaaaggaagctatggtgatgatcaatgttgctctcttatgcac |
316 |
Q |
| |
|
|||||||||||| ||||||| ||| | ||||||||||| ||||| |||||||| |
|
|
| T |
31187898 |
gatttcaacaaagaggaagcgatgatcatgatcaatgtagctcttttatgcac |
31187846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 31195958 - 31195906
Alignment:
| Q |
264 |
gatttcaacaaaaaggaagctatggtgatgatcaatgttgctctcttatgcac |
316 |
Q |
| |
|
|||||||||||| ||||||| ||| | ||||||||||| ||||| |||||||| |
|
|
| T |
31195958 |
gatttcaacaaagaggaagcaatgatcatgatcaatgtagctcttttatgcac |
31195906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 31214570 - 31214518
Alignment:
| Q |
264 |
gatttcaacaaaaaggaagctatggtgatgatcaatgttgctctcttatgcac |
316 |
Q |
| |
|
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|
|
| T |
31214570 |
gatttcaacaaagaggaagcaatgatcatgatcaatgtagctcttttatgcac |
31214518 |
T |
|
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