View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_57 (Length: 220)
Name: NF1098_low_57
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 41043273 - 41043475
Alignment:
| Q |
1 |
agttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttggcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41043273 |
agttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaatttttttccctttggcat |
41043372 |
T |
|
| Q |
101 |
ttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcctta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043373 |
ttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcctta |
41043472 |
T |
|
| Q |
201 |
tat |
203 |
Q |
| |
|
||| |
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| T |
41043473 |
tat |
41043475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 28087150 - 28087022
Alignment:
| Q |
1 |
agttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttggcat |
100 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || || || | ||| ||||||||||| |
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| T |
28087150 |
agttattgtttttctcttgttgagctttctccttctcaatctgaccataagcatatcttaaaatttgactttgcgtatgtaaattttttccctttggcat |
28087051 |
T |
|
| Q |
101 |
ttgctttttaatgttcttgtcaccaatct |
129 |
Q |
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|||||||||||| || ||||| ||||||| |
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|
| T |
28087050 |
ttgctttttaatatttttgtccccaatct |
28087022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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