View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_63 (Length: 210)

Name: NF1098_low_63
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_63
NF1098_low_63
[»] chr6 (12 HSPs)
chr6 (7-201)||(31561928-31562122)
chr6 (7-163)||(33263411-33263567)
chr6 (7-149)||(33401394-33401536)
chr6 (7-146)||(33058337-33058476)
chr6 (7-145)||(33286319-33286457)
chr6 (7-142)||(33305257-33305392)
chr6 (48-145)||(33388856-33388953)
chr6 (7-145)||(9167540-9167678)
chr6 (7-145)||(33359489-33359627)
chr6 (7-132)||(33272573-33272698)
chr6 (7-159)||(33643766-33643918)
chr6 (7-147)||(33410713-33410853)
[»] chr2 (1 HSPs)
chr2 (47-147)||(17439996-17440096)
[»] scaffold1408 (1 HSPs)
scaffold1408 (7-137)||(1402-1532)
[»] scaffold0428 (1 HSPs)
scaffold0428 (7-137)||(7148-7278)
[»] chr4 (9 HSPs)
chr4 (34-162)||(31503284-31503412)
chr4 (47-133)||(31527232-31527318)
chr4 (47-130)||(31478166-31478249)
chr4 (76-147)||(31498065-31498136)
chr4 (48-131)||(31149174-31149257)
chr4 (7-149)||(31490957-31491099)
chr4 (72-133)||(31033078-31033139)
chr4 (51-131)||(31158051-31158131)
chr4 (51-108)||(31484023-31484080)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 31562122 - 31561928
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562122 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 31562023  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttctgagacgacatttccaccataatttccaaagctgatgatgatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31562022 attcaagccactcaacatatcttaatttgttcgaaagacaattcgggctttctgagacgacatttccaccataatttccatagctgatgatgatg 31561928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 33263411 - 33263567
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| |||||||||| |||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||    
T  33263411 accttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggat 33263510  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttctgaga 163  Q
    ||||| |||||||||||||||| |||||||| ||||||||| | |||||| ||||||    
T  33263511 attcatcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgaga 33263567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 33401394 - 33401536
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| ||||||||||  ||||| |||| | |  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  33401394 accttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttgttggcaaatacttgaaaggat 33401493  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagacaatt 149  Q
    |||||  ||| |||||||||||||||| ||| |||||| ||||    
T  33401494 attcatgccaatcaacatatcttaattcgtttgaaagaaaatt 33401536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 33058337 - 33058476
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| ||||||||||  ||||| ||||   || ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  33058337 accttcttgtttttccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggat 33058436  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagaca 146  Q
    ||  || ||| | |||| ||||||||||||||||||||||    
T  33058437 atctaaaccagtgaacaaatcttaatttgttcgaaagaca 33058476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 33286319 - 33286457
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||| ||| ||||||||||  ||||| |||| ||   ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  33286319 accttcttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggat 33286418  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagac 145  Q
    || ||  ||||| |||||||||||||||||| |||||||    
T  33286419 atccagtccactgaacatatcttaatttgtttgaaagac 33286457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 33305257 - 33305392
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||||||||||||||   |||  |||| |||   |||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  33305257 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 33305356  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaa 142  Q
    |||||  ||| ||||||||| |||||||||| ||||    
T  33305357 attcatgccaatcaacatattttaatttgtttgaaa 33305392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 33388856 - 33388953
Alignment:
Q  48 caagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagac 145  Q
    ||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||||| |||| |||||||    
T  33388856 caagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagac 33388953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 9167540 - 9167678
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    ||||| |||||| ||||||||||  ||||| |||| |    |||||||| || ||||||||||| || ||||||||| ||||||||||||||||||||||    
T  9167540 acctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggat 9167639  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagac 145  Q
    ||  |  |||||||| ||||||||||| |||||||||||    
T  9167640 atcgataccactcaagatatcttaattcgttcgaaagac 9167678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 33359489 - 33359627
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| ||||||||||  ||||||||||| ||  ||||||||||||||||||||||| || || |||||||| ||||||||||| | ||||||    
T  33359489 accttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactggcaaggat 33359588  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagac 145  Q
    || |  |||||| || | ||||||||  ||| |||||||    
T  33359589 atgcctcccactgaataaatcttaatgcgtttgaaagac 33359627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 33272573 - 33272698
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| ||||||||||  | |||  |||  ||  |||||||||||||| ||| |||| |||||||||||||| ||| | | ||||||||||||    
T  33272573 accttcttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggat 33272672  T
Q  107 attcaacccactcaacatatcttaat 132  Q
    || || ||||||||||||||||||||    
T  33272673 atccatcccactcaacatatcttaat 33272698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 33643918 - 33643766
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| ||||||||||  ||||| ||||  ||  ||||| |||||||||||||| || ||| |||||| ||||||||||| || |||||||||    
T  33643918 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 33643819  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttct 159  Q
    |   |  ||| ||||||||||||||||  || ||||||||| | |||||||||    
T  33643818 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttct 33643766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 33410713 - 33410853
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    ||||||||| || ||||||||||  | | ||||||  ||  |||||||||||| ||||||||||  |||||||||||| ||||||| | |  ||||||||    
T  33410713 accttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaattcccagaaaggat 33410812  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagacaa 147  Q
    | |   |||| |||| ||| ||||||||||| |||||||||    
T  33410813 aatgctcccagtcaaaataccttaatttgtttgaaagacaa 33410853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 17440096 - 17439996
Alignment:
Q  47 ccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagaca 146  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  17440096 ccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaatttgttcgaaagaca 17439997  T
Q  147 a 147  Q
    |    
T  17439996 a 17439996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 1402 - 1532
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| ||||||||||  |||||| ||||||| |||| ||||||||||||||||||   ||||||||||||||||||| ||||||||||||||    
T  1402 accttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggat 1501  T
Q  107 attcaacccactcaacatatcttaatttgtt 137  Q
    || ||  ||| | |||||||| |||||||||    
T  1502 atccagtccattgaacatatcgtaatttgtt 1532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 7148 - 7278
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||||| ||||||||||  |||||| ||||||| |||| ||||||||||||||||||   ||||||||||||||||||| ||||||||||||||    
T  7148 accttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggat 7247  T
Q  107 attcaacccactcaacatatcttaatttgtt 137  Q
    || ||  ||| | |||||||| |||||||||    
T  7248 atccagtccattgaacatatcgtaatttgtt 7278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 31503412 - 31503284
Alignment:
Q  34 atgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 133  Q
    |||||||| |||  ||||||||| || ||||||| ||  || ||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||    
T  31503412 atgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttgacggcaaatacttgaaaggatattcactccattcaacatatcttaatt 31503313  T
Q  134 tgttcgaaagacaattcgggctttctgag 162  Q
     ||| |||||||||||  ||||| |||||    
T  31503312 cgttagaaagacaattgaggcttcctgag 31503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 31527232 - 31527318
Alignment:
Q  47 ccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 133  Q
    |||||||||| || |||||||  ||||| ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31527232 ccaagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaatt 31527318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 31478249 - 31478166
Alignment:
Q  47 ccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatctta 130  Q
    ||||||||||||| ||||||| ||  | || |||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  31478249 ccaagatcaattcaacaagttgattagagtcaaaactcgatggcaaatacttgaaaggatattcactccactcaacatatctta 31478166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 31498136 - 31498065
Alignment:
Q  76 tgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaa 147  Q
    |||||| ||||||| |||||| ||||||||||||||  |||||||| ||||||||||||||| |||||||||    
T  31498136 tgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaa 31498065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 31149174 - 31149257
Alignment:
Q  48 caagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaa 131  Q
    |||||||||||| ||||||| ||  ||  ||||||||||||||||||||||||||||||||  |  |||||| |||||||||||    
T  31149174 caagatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatatctattccactcgacatatcttaa 31149257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 31491099 - 31490957
Alignment:
Q  7 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 106  Q
    |||||||||| | |||||||||| || |||||||| |   | |||||||||||   ||||||||   | ||| |||||||||| ||||||  ||||||||    
T  31491099 accttcttgtctttccatagttgtgtgatgctgctacctactaagatcaattcggaaagttcatcaagctgagaacttgatggtaaatacaagaaaggat 31491000  T
Q  107 attcaacccactcaacatatcttaatttgttcgaaagacaatt 149  Q
    ||||| |||| |||| |||||||||||| || |||||| ||||    
T  31490999 attcatcccattcaagatatcttaatttattagaaagataatt 31490957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 31033078 - 31033139
Alignment:
Q  72 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 133  Q
    ||||||||||||||  ||||||||| ||||||||||||||  ||||||||||||||| ||||    
T  31033078 ggggtgaaaacttgtaggcaaatacatgaaaggatattcagtccactcaacatatctcaatt 31033139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 31158051 - 31158131
Alignment:
Q  51 gatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaa 131  Q
    ||||||||| ||||||| || ||| ||||||| || ||||||||||||||||||||||  | ||||||| || ||||||||    
T  31158051 gatcaattcaacaagttgattgggctgaaaacatgctggcaaatacttgaaaggatatctaccccactctacgtatcttaa 31158131  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 31484080 - 31484023
Alignment:
Q  51 gatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatat 108  Q
    ||||||||| ||||||| || |||  ||||| |||||||||||||| |||||||||||    
T  31484080 gatcaattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggatat 31484023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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