View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1098_low_65 (Length: 209)
Name: NF1098_low_65
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_65 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 16841184 - 16841280
Alignment:
| Q |
16 |
ataagagaataccccacaacttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagtagaaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16841184 |
ataagagaataccccacaacttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagtagaaag |
16841280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 9453006 - 9452967
Alignment:
| Q |
151 |
gttgctcttttaagatgaagcggtgaattcattaaatata |
190 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9453006 |
gttgctcttttaagatgaagcggtaaattcattaaatata |
9452967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 37704445 - 37704379
Alignment:
| Q |
35 |
cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
37704445 |
cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa |
37704379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 37437511 - 37437442
Alignment:
| Q |
35 |
cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagta |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
37437511 |
cttagtttcaagttatgtttcctatataaata---gaggctaatcatttggtatatcctaaatcatcaaagta |
37437442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 37698625 - 37698554
Alignment:
| Q |
37 |
tagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatat----cgtaaatcatcaaagta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
37698625 |
tagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctacgtaaatcatcaaagta |
37698554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 46424193 - 46424154
Alignment:
| Q |
151 |
gttgctcttttaagatgaagcggtgaattcattaaatata |
190 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46424193 |
gttgctcttttaagatgaagcgatgaattcattaaatata |
46424154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University