View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_67 (Length: 204)

Name: NF1098_low_67
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_67
NF1098_low_67
[»] chr4 (2 HSPs)
chr4 (20-123)||(16841177-16841280)
chr4 (152-185)||(16841309-16841342)
[»] chr5 (5 HSPs)
chr5 (46-115)||(37704379-37704445)
chr5 (46-118)||(37437442-37437511)
chr5 (48-118)||(37698554-37698625)
chr5 (152-185)||(37437398-37437431)
chr5 (152-185)||(37698490-37698523)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 16841177 - 16841280
Alignment:
Q  20 caacaatataagagaataccccacaacttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagtag 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16841177 caacaaaataagagaataccccacaacttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagtag 16841276  T
Q  120 aaag 123  Q
    ||||    
T  16841277 aaag 16841280  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 16841309 - 16841342
Alignment:
Q  152 atcggagtaagttgctctaaatggggtccttttt 185  Q
    ||||||||||||||||||||||||||||||||||    
T  16841309 atcggagtaagttgctctaaatggggtccttttt 16841342  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 37704445 - 37704379
Alignment:
Q  46 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 115  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  37704445 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 37704379  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 37437511 - 37437442
Alignment:
Q  46 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagta 118  Q
    |||||||||| |||||||||||||||||||||   ||||||||||| |||||||||| |||||||||||||||    
T  37437511 cttagtttcaagttatgtttcctatataaata---gaggctaatcatttggtatatcctaaatcatcaaagta 37437442  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 37698625 - 37698554
Alignment:
Q  48 tagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatat----cgtaaatcatcaaagta 118  Q
    ||||||||||||||||||||||||||||||   ||||||||||| |||||||||    |||||||||||||||||    
T  37698625 tagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctacgtaaatcatcaaagta 37698554  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 37437431 - 37437398
Alignment:
Q  152 atcggagtaagttgctctaaatggggtccttttt 185  Q
    ||||| ||||||||||||||||||||||||||||    
T  37437431 atcggtgtaagttgctctaaatggggtccttttt 37437398  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 37698523 - 37698490
Alignment:
Q  152 atcggagtaagttgctctaaatggggtccttttt 185  Q
    ||||| ||||||||||||||||||||||||||||    
T  37698523 atcggtgtaagttgctctaaatggggtccttttt 37698490  T

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