View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10990_high_1 (Length: 348)
Name: NF10990_high_1
Description: NF10990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10990_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 37905009 - 37905308
Alignment:
| Q |
10 |
atgagtcgttgatactctggctgtttgaacataaagatcagcataaataaaacccaagttaatatacttcatgatgtacaaatttgaattaatcattnnn |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37905009 |
atgagtcgttgatactctggctgtttgaacataaagatcagcataaataaaacccaagttaatatacttcatgatgtacaaatttgaattaatcattaaa |
37905108 |
T |
|
| Q |
110 |
nnnngagaaaaatggatactcaaaaacataatcatcttcttcaaaacaatggccactgttacacagttcaaaaggtcttatattggaacggaatgcacaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
37905109 |
aaaagagaaaaatggatactcaaaaacataatcatcttcttcaaaaca------------------ttcaaaaggtcttatattgaaacggaatgcacaa |
37905190 |
T |
|
| Q |
210 |
tccatggtgaatcaattgtgtaattgcgtatatacatataacgataactgctccatagtaacataattattaatcacttaattttcaattgtaacaattg |
309 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
37905191 |
tccatggtgaatcaattgtgtaattgcatatatacatataacgataactgctccatagtaacataattattaatcgcttaattt----ttgtaacaattg |
37905286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 37911520 - 37911819
Alignment:
| Q |
10 |
atgagtcgttgatactctggctgtttgaacataaagatcagcataaataaaacccaagttaatatacttcatgatgtacaaatttgaattaatcattnnn |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911520 |
atgagtcgttgatactctggctgtttgaacataaagatcagcataaataaaacccaagttaatatacttcatgatgtacaaatttgaattaatcattaaa |
37911619 |
T |
|
| Q |
110 |
nnnngagaaaaatggatactcaaaaacataatcatcttcttcaaaacaatggccactgttacacagttcaaaaggtcttatattggaacggaatgcacaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
37911620 |
aaaagagaaaaatggatactcaaaaacataatcatcttcttcaaaaca------------------ttcaaaaggtcttatattgaaacggaatgcacaa |
37911701 |
T |
|
| Q |
210 |
tccatggtgaatcaattgtgtaattgcgtatatacatataacgataactgctccatagtaacataattattaatcacttaattttcaattgtaacaattg |
309 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
37911702 |
tccatggtgaatcaattgtgtaattgcatatatacatataacgataactgctccatagtaacataattattaatcgcttaattt----ttgtaacaattg |
37911797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University