View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10990_low_5 (Length: 253)
Name: NF10990_low_5
Description: NF10990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10990_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 39725619 - 39725793
Alignment:
| Q |
9 |
agcagcacagatgtttgtgttgagaacagccatggatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcccatcccatccatagtaac |
108 |
Q |
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| T |
39725619 |
agcagcacaaatgtttgtgttgagaacagccattgatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcccatcccatccatagtaac |
39725718 |
T |
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| Q |
109 |
cctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttcttcgatcttggccccacc |
183 |
Q |
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| T |
39725719 |
cctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttcttcgatctaggccccacc |
39725793 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 5624512 - 5624681
Alignment:
| Q |
10 |
gcagcacagatgtttgtgttgagaacagccatggatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcccatcccatccatagtaacc |
109 |
Q |
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| T |
5624512 |
gcagcacatatgttagtgttgagtacagcaatagaagagtcaatgtttgctgcatatggtgctccaccattgaaccctgaccaacccatccataacaatc |
5624611 |
T |
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| Q |
110 |
ctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttcttcgatcttggccc |
179 |
Q |
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|||| ||||| | | | || || |||||||||||||||||||||||||| || ||||| | |||||||| |
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| T |
5624612 |
ctgctcctgctagcataagcaatacattgtttggtgggaatctctccctatcactcttcaaccttggccc |
5624681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 13348675 - 13348775
Alignment:
| Q |
61 |
gagtagggatctccaccgttgaaacctgcccatcccatccatagtaaccctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgt |
160 |
Q |
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||||| |||||||| || ||||| |||| |||||||||||||| || ||||| ||||| ||| | || | | ||||||||||||||| || ||||||| |
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| T |
13348675 |
gagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttggtgggaacctttccctgt |
13348774 |
T |
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| Q |
161 |
c |
161 |
Q |
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| T |
13348775 |
c |
13348775 |
T |
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