View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10990_low_6 (Length: 238)

Name: NF10990_low_6
Description: NF10990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10990_low_6
NF10990_low_6
[»] chr7 (18 HSPs)
chr7 (1-222)||(7877855-7878076)
chr7 (1-219)||(8590466-8590684)
chr7 (38-194)||(8581553-8581709)
chr7 (40-139)||(8570219-8570318)
chr7 (12-194)||(8383009-8383191)
chr7 (20-120)||(8609844-8609944)
chr7 (40-117)||(8545563-8545640)
chr7 (154-218)||(8559157-8559221)
chr7 (1-80)||(1301427-1301506)
chr7 (1-80)||(8659330-8659409)
chr7 (47-120)||(29577840-29577913)
chr7 (47-116)||(29582009-29582078)
chr7 (40-120)||(8576253-8576333)
chr7 (12-114)||(8601907-8602009)
chr7 (153-194)||(8537889-8537930)
chr7 (40-76)||(8654421-8654457)
chr7 (40-76)||(8667390-8667426)
chr7 (40-76)||(10494535-10494571)
[»] chr8 (1 HSPs)
chr8 (34-138)||(12528413-12528517)
[»] chr2 (2 HSPs)
chr2 (1-80)||(16657639-16657718)
chr2 (1-74)||(7542199-7542272)
[»] chr4 (2 HSPs)
chr4 (40-88)||(9336052-9336100)
chr4 (20-77)||(23596726-23596783)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7877855 - 7878076
Alignment:
Q  1 aagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7877855 aagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagacta 7877954  T
Q  101 caattgacatagatgctatacacgagggaattgacttcaatatgttattaagtcgggccaagtttgagcaactcaatatggatctttttgaaaattgttt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7877955 caattgacatagatgctatacacgacggaattgacttcaatatgttattaagtcgggccaagtttgagcaactcaatatggatctttttgaaaattgttt 7878054  T
Q  201 ggcgattgtcaagagttgtctt 222  Q
    ||||||||||||||||||||||    
T  7878055 ggcgattgtcaagagttgtctt 7878076  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8590684 - 8590466
Alignment:
Q  1 aagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagacta 100  Q
    ||||||||||||||  |  |||| ||| | ||||| ||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||| | |    
T  8590684 aagaataaagtggatttaagtgggaacgcaagggctcttaggaggttgaaaacagcttgtgagagggctaaaaggacactgtcatatgatactgaggcaa 8590585  T
Q  101 caattgacatagatgctatacacgagggaattgacttcaatatgttattaagtcgggccaagtttgagcaactcaatatggatctttttgaaaattgttt 200  Q
    |||| | ||||||||||||| | |||||| |||||||| || | ||| | | ||||||||||||||| ||||| || | |||||| |||||||| |||||    
T  8590584 caatcggcatagatgctatatatgagggagttgacttccatttattagtcactcgggccaagtttgaacaacttaacagggatctctttgaaaagtgttt 8590485  T
Q  201 ggcgattgtcaagagttgt 219  Q
    || ||||||||||| ||||    
T  8590484 ggagattgtcaagaattgt 8590466  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 8581709 - 8581553
Alignment:
Q  38 ttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgctatacacgagggaattgactt 137  Q
    |||| |||||||| ||||| |||||||| || ||||||||||| |||| ||| |||||| | ||||||||| ||||| |||||||  | || ||||||||    
T  8581709 ttagaaggttgaggactgcttgtgagagagcgaaaaggacactttcatatgacactgaggccacaattgacctagattctatacatcaaggtattgactt 8581610  T
Q  138 caatatgttattaagtcgggccaagtttgagcaactcaatatggatctttttgaaaa 194  Q
    | ||  || | ||| ||||||||||||||||||| | |||||| | || ||||||||    
T  8581609 ctattcgtcaataactcgggccaagtttgagcaaatgaatatgaacctctttgaaaa 8581553  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 8570318 - 8570219
Alignment:
Q  40 aggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgctatacacgagggaattgacttca 139  Q
    |||||||| ||||| || ||||||||||| ||||||||||| |||| |||||||||| | ||||||||  ||||||||||| |  |||||||||||||||    
T  8570318 aggaggttaagaacagcttgtgagagggcaaaaaggacactttcatatgatactgaggccacaattgagctagatgctatatataagggaattgacttca 8570219  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 8383009 - 8383191
Alignment:
Q  12 ggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacata 111  Q
    ||||||| |||| ||||| | ||| ||||| ||||| ||||| || || |||||||| ||||||||||| |||||||||| |||| |  | |||||||||    
T  8383009 ggacattagtgggaacccaaaggctcttagaaggttaagaacggcttgcgagagggcaaaaaggacactttcatttgatattgaggccgcgattgacata 8383108  T
Q  112 gatgctatacacgagggaattgacttcaatatgttattaagtcgggccaagtttgagcaactcaatatggatctttttgaaaa 194  Q
    |||||| |  | ||||| ||||| || |||   | | | | ||||||||| |||||||||||||||||||| || ||||||||    
T  8383109 gatgctctgtatgagggtattgattttaattcttcagtcactcgggccaaatttgagcaactcaatatggacctatttgaaaa 8383191  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 8609944 - 8609844
Alignment:
Q  20 gtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgctat 119  Q
    |||| ||| ||||||| |||||||||||||| ||||| ||||||||||| || |||||||| |||||||| || ||| | |||||||| || ||||||||    
T  8609944 gtgggaactcgagggctcttaggaggttgaggactgcttgtgagagggcaaagaggacactttcatttgacacggaggccacaattgatattgatgctat 8609845  T
Q  120 a 120  Q
    |    
T  8609844 a 8609844  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 8545640 - 8545563
Alignment:
Q  40 aggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgct 117  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| ||||  || |||||| | ||||||||| ||||||||    
T  8545640 aggaggttgagaactgcctgtgagaaggcaaaaaggacactttcatacgacactgaggccacaattgacctagatgct 8545563  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 8559221 - 8559157
Alignment:
Q  154 cgggccaagtttgagcaactcaatatggatctttttgaaaattgtttggcgattgtcaagagttg 218  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||| ||| ||||| |||||||||    
T  8559221 cgggctaagtttgagcaactgaatatggatctctttgaaaagtgtatggagattgccaagagttg 8559157  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1301506 - 1301427
Alignment:
Q  1 aagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacact 80  Q
    |||||||||||||||||| |||| |||| ||   || | ||||||||||||| ||| ||||||||||| |||||||||||    
T  1301506 aagaataaagtggacattagtggtaaccagaaatccttaaggaggttgagaattgcgtgtgagagggcaaaaaggacact 1301427  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8659409 - 8659330
Alignment:
Q  1 aagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacact 80  Q
    |||||||||||||||||| |||| ||||| |   || | ||||||||||||||||| ||||||||||| || ||||||||    
T  8659409 aagaataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagaggacact 8659330  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 29577840 - 29577913
Alignment:
Q  47 tgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgctata 120  Q
    |||||||||| ||||||||||| || ||| |||| |||| ||| | |||| | |||||||||||||||||||||    
T  29577840 tgagaactgcttgtgagagggcaaagagggcactttcatatgacattgaggccacaattgacatagatgctata 29577913  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 29582009 - 29582078
Alignment:
Q  47 tgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgc 116  Q
    ||||||| || ||||||||||| || |||||||| |||||||| | |||||| ||||||||| |||||||    
T  29582009 tgagaacagcttgtgagagggcaaagaggacactttcatttgacattgagaccacaattgacgtagatgc 29582078  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 8576333 - 8576253
Alignment:
Q  40 aggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgctata 120  Q
    ||||||||||||||||| ||||| | ||| ||||||||||| |||| ||| |||||  | ||||||||  |||||||||||    
T  8576333 aggaggttgagaactgcttgtgaaaaggcaaaaaggacactttcatatgacactgatgccacaattgaactagatgctata 8576253  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 8602009 - 8601907
Alignment:
Q  12 ggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacata 111  Q
    ||||||| |||| | ||||||||  ||||| ||||| ||||| || || |||||| | ||||||||||| |||||||||||  |  | ||||||||||||    
T  8602009 ggacattagtgggagcccgagggtgcttagaaggttaagaacggcctgcgagaggacaaaaaggacactttcatttgataccaatgcgacaattgacata 8601910  T
Q  112 gat 114  Q
    |||    
T  8601909 gat 8601907  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 8537930 - 8537889
Alignment:
Q  153 tcgggccaagtttgagcaactcaatatggatctttttgaaaa 194  Q
    |||||||||||||||||||||||| ||||| || ||||||||    
T  8537930 tcgggccaagtttgagcaactcaacatggacctctttgaaaa 8537889  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 8654457 - 8654421
Alignment:
Q  40 aggaggttgagaactgcatgtgagagggctaaaagga 76  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8654457 aggaggttgagaactgcctgtgagagggcaaaaagga 8654421  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 8667426 - 8667390
Alignment:
Q  40 aggaggttgagaactgcatgtgagagggctaaaagga 76  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8667426 aggaggttgagaactgcctgtgagagggcaaaaagga 8667390  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 10494535 - 10494571
Alignment:
Q  40 aggaggttgagaactgcatgtgagagggctaaaagga 76  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  10494535 aggaggttgagaactgcctgtgagagggcaaaaagga 10494571  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 12528517 - 12528413
Alignment:
Q  34 gcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgctatacacgagggaattg 133  Q
    ||||| ||||| |||||||||   || |||| ||| ||||||||||| ||||  ||||| ||| |||||||||||||||||||||||   ||||| ||||    
T  12528517 gccctaaggagattgagaactaactgcgagaaggcgaaaaggacactttcatacgatacagaggctacaattgacatagatgctatatgtgagggcattg 12528418  T
Q  134 acttc 138  Q
    |||||    
T  12528417 acttc 12528413  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16657639 - 16657718
Alignment:
Q  1 aagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacact 80  Q
    |||||||| ||||||||  |||| ||| | || ||| | ||||||||||||||||||||||||||||| || ||||||||    
T  16657639 aagaataaggtggacataagtgggaactcaagagccttgaggaggttgagaactgcatgtgagagggcaaagaggacact 16657718  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7542272 - 7542199
Alignment:
Q  1 aagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaag 74  Q
    ||||| |||||||||||| |||| || || |  ||| | ||||||||||||||||| ||||||||||| |||||    
T  7542272 aagaacaaagtggacattagtgggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaag 7542199  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 9336052 - 9336100
Alignment:
Q  40 aggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttg 88  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||| ||||    
T  9336052 aggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttg 9336100  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 23596726 - 23596783
Alignment:
Q  20 gtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggac 77  Q
    ||||||| || ||||| ||||| |||||||||||||| |||||||| ||||| |||||    
T  23596726 gtggaaatccaagggctcttagaaggttgagaactgcttgtgagagagctaagaggac 23596783  T

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