View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10991_low_2 (Length: 493)
Name: NF10991_low_2
Description: NF10991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10991_low_2 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 25616802 - 25616339
Alignment:
| Q |
17 |
caataaactcatttatatctattaactaattggaattttaccaatgaaatccagaaacaattagaaaacccggtaccatctactttgatgtctaatgcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616802 |
caataaactcatttatatctattaactaattggaatttcaccaatgaaatccagaaacaattagaaaacccggtaccatctactttgatgtctaatgcag |
25616703 |
T |
|
| Q |
117 |
tatcattcacataccatgcaaccactaaagcatcatcaatcataacagctacataaatcctgatgattaactccgatacatggattgttcttaaacatac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
25616702 |
tatcattcacataccatgcaaccactaaagcatcatcaatcataacagctacataaatcctgataactaactccgatacatggattgttcttaaacatac |
25616603 |
T |
|
| Q |
217 |
tcttaattaatttcagtatctatttcaatctgagcatatatataacagataacatatatttgttatatcagtctactaaaataacagaaagaggagcagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616602 |
tcttaattaatttcagtatctatttcaatctgagcatatatataacagataacatatatttgttatatcagtctactaaaataacagaaagaggagcagg |
25616503 |
T |
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| Q |
317 |
attttttcttggtatacccttctttgtcacaattgtagctaaagtctctgcccnnnnnnnnctaacgcatactctcgagggatattttctttgtaccatc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
25616502 |
attttttcttggtatacccttctttgtcacaattgtagctaacgtctctgccttttcttttctaacacatactctcgagggatattttctttgtaccatc |
25616403 |
T |
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| Q |
417 |
tttgtcttagccacaattgttggtgcagcttcttccttttcttcctctacaccagcaggatttc |
480 |
Q |
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| T |
25616402 |
tttgtcttagccacaattgttggtgcagcttcttccttttcttcctctacaccagcaggatttc |
25616339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 25611271 - 25611124
Alignment:
| Q |
120 |
cattcacataccatgcaaccactaaagcatcatcaatcataacagctacataaatcctgatgattaactccgatacatggattgttcttaaacatactct |
219 |
Q |
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||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| || | ||||||| ||| |||||||||| |||| |||||| | |
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| T |
25611271 |
cattcacatacaatgcaaccataaaaacaacatcaatcataacagctacataaatcctaataactaactccaatatatggattgttgttaagcatact-t |
25611173 |
T |
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| Q |
220 |
taattaatttcagtatctatttcaatctgagcatatatataacagataa |
268 |
Q |
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| T |
25611172 |
taattaatctcagtatctatttcaatctgatcatatatataacagataa |
25611124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 6113 - 6356
Alignment:
| Q |
17 |
caataaactcatttatatctattaactaattggaattttaccaatgaaatccagaaacaattagaaaacccggtaccatctactttgatgtctaatgcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6113 |
caataaactcatttatatctattaactaattggaatttcaccaatgaaatccagaaacaattagtaaacccggtaccatctactttgatgtctaatgcag |
6212 |
T |
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| Q |
117 |
tatcattcacataccatgcaaccactaaagcatcatcaatcataacagctacataaatcctgatgattaactccgatacatggattgttcttaaacatac |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6213 |
tatcattcacataccatgtaaccactaaagcatcatcaatcataacagctgcataaatcctgataattaactccgatacatggattgttcttaaacatac |
6312 |
T |
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| Q |
217 |
tcttaattaatttcagtatctatttcaatctgagcatatatata |
260 |
Q |
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| T |
6313 |
tcttaattaatttcagtatctatttcaatctgagcatatatata |
6356 |
T |
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