View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10991_low_6 (Length: 312)

Name: NF10991_low_6
Description: NF10991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10991_low_6
NF10991_low_6
[»] chr1 (13 HSPs)
chr1 (37-296)||(52145688-52145947)
chr1 (145-290)||(52142176-52142321)
chr1 (1-38)||(19439271-19439308)
chr1 (1-38)||(30984147-30984184)
chr1 (1-36)||(30983276-30983311)
chr1 (1-38)||(22506942-22506979)
chr1 (1-38)||(23351638-23351675)
chr1 (1-38)||(23551693-23551730)
chr1 (1-38)||(28649706-28649743)
chr1 (1-38)||(39958607-39958644)
chr1 (1-38)||(44503459-44503496)
chr1 (1-38)||(44598655-44598692)
chr1 (1-38)||(49057435-49057472)
[»] chr8 (19 HSPs)
chr8 (145-296)||(17522266-17522417)
chr8 (1-38)||(15224774-15224811)
chr8 (1-38)||(23154308-23154345)
chr8 (130-253)||(17020090-17020216)
chr8 (130-253)||(17550527-17550653)
chr8 (1-38)||(1939473-1939510)
chr8 (1-38)||(5340542-5340579)
chr8 (1-38)||(7601708-7601745)
chr8 (1-38)||(8977726-8977763)
chr8 (1-38)||(9898987-9899024)
chr8 (1-38)||(11761061-11761098)
chr8 (1-38)||(16472315-16472352)
chr8 (1-38)||(16476886-16476923)
chr8 (141-262)||(17017000-17017121)
chr8 (1-38)||(17132739-17132776)
chr8 (141-262)||(17547437-17547558)
chr8 (1-38)||(37587366-37587403)
chr8 (1-37)||(8391452-8391488)
chr8 (2-38)||(9899653-9899689)
[»] scaffold0150 (2 HSPs)
scaffold0150 (141-283)||(17952-18094)
scaffold0150 (130-253)||(9054-9180)
[»] chr7 (11 HSPs)
chr7 (1-38)||(11337710-11337747)
chr7 (1-38)||(21984881-21984918)
chr7 (1-38)||(41567922-41567959)
chr7 (1-38)||(3843229-3843266)
chr7 (1-38)||(4706657-4706694)
chr7 (1-38)||(20016748-20016785)
chr7 (1-38)||(21985577-21985614)
chr7 (1-38)||(23966338-23966375)
chr7 (1-38)||(43210161-43210198)
chr7 (1-38)||(44372612-44372649)
chr7 (1-38)||(44381468-44381505)
[»] chr6 (7 HSPs)
chr6 (1-38)||(476944-476981)
chr6 (1-36)||(29844490-29844525)
chr6 (1-38)||(5956158-5956195)
chr6 (1-38)||(22353268-22353305)
chr6 (1-38)||(24051278-24051315)
chr6 (1-38)||(29846242-29846279)
chr6 (1-38)||(29979224-29979261)
[»] chr5 (9 HSPs)
chr5 (1-38)||(11120232-11120269)
chr5 (1-38)||(24052410-24052447)
chr5 (1-37)||(26710223-26710259)
chr5 (1-37)||(26979957-26979993)
chr5 (1-38)||(2320783-2320820)
chr5 (1-38)||(4808620-4808657)
chr5 (1-38)||(15795722-15795759)
chr5 (1-38)||(29627130-29627167)
chr5 (1-38)||(35988878-35988915)
[»] chr4 (11 HSPs)
chr4 (1-38)||(4900280-4900317)
chr4 (1-38)||(7402889-7402926)
chr4 (1-38)||(50064671-50064708)
chr4 (1-38)||(53535598-53535635)
chr4 (1-35)||(7402001-7402035)
chr4 (1-38)||(15807679-15807716)
chr4 (1-38)||(38657850-38657887)
chr4 (1-38)||(47848826-47848863)
chr4 (1-38)||(47864512-47864549)
chr4 (1-38)||(51162911-51162948)
chr4 (1-38)||(52502428-52502465)
[»] chr3 (14 HSPs)
chr3 (1-38)||(15951514-15951551)
chr3 (1-38)||(31091331-31091368)
chr3 (1-38)||(35325764-35325801)
chr3 (1-38)||(4996895-4996932)
chr3 (1-38)||(9175741-9175778)
chr3 (1-38)||(9598268-9598305)
chr3 (1-38)||(20289589-20289626)
chr3 (1-38)||(23142828-23142865)
chr3 (1-38)||(25165922-25165959)
chr3 (1-38)||(25166745-25166782)
chr3 (1-38)||(26051493-26051530)
chr3 (1-38)||(26052175-26052212)
chr3 (1-38)||(37737609-37737646)
chr3 (1-38)||(44706933-44706970)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-36)||(693-728)
[»] scaffold0817 (1 HSPs)
scaffold0817 (1-38)||(5032-5069)
[»] scaffold0765 (1 HSPs)
scaffold0765 (1-38)||(356-393)
[»] scaffold0518 (1 HSPs)
scaffold0518 (1-38)||(1103-1140)
[»] scaffold0141 (2 HSPs)
scaffold0141 (1-38)||(10329-10366)
scaffold0141 (1-38)||(11137-11174)
[»] chr2 (10 HSPs)
chr2 (1-38)||(80632-80669)
chr2 (1-38)||(2238821-2238858)
chr2 (1-38)||(21716463-21716500)
chr2 (1-38)||(24558863-24558900)
chr2 (1-38)||(24559551-24559588)
chr2 (1-38)||(26882737-26882774)
chr2 (1-38)||(28917104-28917141)
chr2 (1-38)||(29359309-29359346)
chr2 (1-38)||(35908422-35908459)
chr2 (2-38)||(9276848-9276884)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 37 - 296
Target Start/End: Complemental strand, 52145947 - 52145688
Alignment:
Q  37 cactctttaattaattatttttgcaacaaccacacgcaactctttgggttaatatttgcttctaatgtagtacagtacgattaactttcaataccaatat 136  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52145947 cactctttaattaattatttgtgcaacaaccacacgcaactctttgggttaatatttgcttctaatgtagtacagtactattaactttcaataccaatat 52145848  T
Q  137 ggcttcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagac 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  52145847 ggcttcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgctgaagcttcaaaatctgtaatagac 52145748  T
Q  237 tttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52145747 tttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaat 52145688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 145 - 290
Target Start/End: Complemental strand, 52142321 - 52142176
Alignment:
Q  145 cttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttctgtt 244  Q
    |||||||| |||||||||| ||  ||||||||||||| || ||||||||| |||||||||||||||| ||||||| |||| ||||  |||||||||| ||    
T  52142321 cttcttcttccaccaaagtctccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtcgtagactttctttt 52142222  T
Q  245 caatttgctatgcttgccaattggcaccgtggttaagctcctaagc 290  Q
    ||| |||||||| |||||||| ||||| || || ||||| ||||||    
T  52142221 caacttgctatgtttgccaatcggcactgttgtgaagctgctaagc 52142176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19439271 - 19439308
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19439271 ttttacagggacgaaaatcaaaacgggcccaaattaca 19439308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30984147 - 30984184
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30984147 ttttacagggacgaaaatcaaaacgcgtccaaattaca 30984184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30983311 - 30983276
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaatta 36  Q
    ||||||||||||||||||||||||||| ||||||||    
T  30983311 ttttacagggacgaaaatcaaaacgcgtccaaatta 30983276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22506942 - 22506979
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  22506942 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 22506979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23351638 - 23351675
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  23351638 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 23351675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23551730 - 23551693
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  23551730 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 23551693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28649743 - 28649706
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  28649743 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 28649706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39958607 - 39958644
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  39958607 ttttacaaggacgaaaatcaaaacgggcccaaattaca 39958644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44503459 - 44503496
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  44503459 ttttacagggacgaaaatcaaaatgcgctcaaattaca 44503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44598655 - 44598692
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  44598655 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 44598692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49057472 - 49057435
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  49057472 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 49057435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 145 - 296
Target Start/End: Original strand, 17522266 - 17522417
Alignment:
Q  145 cttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttctgtt 244  Q
    |||||||| |||||||||||||  ||||||||||||| || ||||||||| |||||||||||||||| ||||||| |||| ||||  | |||||||| ||    
T  17522266 cttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtggttgactttctttt 17522365  T
Q  245 caatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaat 296  Q
    ||| ||||||||||||||||| ||||| || || ||||| |||||| |||||    
T  17522366 caacttgctatgcttgccaatcggcactgttgtgaagctactaagcgcaaat 17522417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15224811 - 15224774
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  15224811 ttttacagggacgaaaatcaaaacgggcccaaattaca 15224774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23154308 - 23154345
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23154308 ttttacagggacgaaaatcaaaatgcgcccaaattaca 23154345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 17020090 - 17020216
Alignment:
Q  130 ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatc 226  Q
    ||||||||||||||||| ||||| |||||||   |||| |  | || |||||||| || || | ||||||||||||||| ||||| ||||| | |||| |    
T  17020090 ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagc 17020189  T
Q  227 tgtaatagactttctgttcaatttgct 253  Q
    ||| ||||| ||||| |||||| ||||    
T  17020190 tgtgatagattttcttttcaatctgct 17020216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 17550527 - 17550653
Alignment:
Q  130 ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatc 226  Q
    ||||||||||||||||| ||||| |||||||   |||| |  | || |||||||| || || | ||||||||||||||| ||||| ||||| | |||| |    
T  17550527 ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagc 17550626  T
Q  227 tgtaatagactttctgttcaatttgct 253  Q
    ||| ||||| ||||| |||||| ||||    
T  17550627 tgtgatagattttcttttcaatctgct 17550653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1939510 - 1939473
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  1939510 ttttacagggacgaaaatcaaaatgagcccaaattaca 1939473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5340542 - 5340579
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  5340542 ttttacaaggacgaaaatcaaaacgggcccaaattaca 5340579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7601708 - 7601745
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  7601708 ttttacagggacgaaaatcaaaactggcccaaattaca 7601745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8977726 - 8977763
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  8977726 ttttacagagacgaaaatcaaaacgcgtccaaattaca 8977763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9899024 - 9898987
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  9899024 ttttacagggacgaaaatcaaaatgagcccaaattaca 9898987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11761098 - 11761061
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  11761098 ttttacagggacgaaaatcaaaatgagcccaaattaca 11761061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16472352 - 16472315
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  16472352 ttttacagggacgaaaatcaaaacgcgtctaaattaca 16472315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16476923 - 16476886
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  16476923 ttttacagggacgaaaatcaaaacgcgtctaaattaca 16476886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 17017121 - 17017000
Alignment:
Q  141 tcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttc 240  Q
    ||||||||||| ||||||||| || |  | || |||||||| || ||||||| ||| | |||||||||||| ||||| |  ||| | ||  |||||||||    
T  17017121 tcttcttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttc 17017022  T
Q  241 tgttcaatttgctatgcttgcc 262  Q
    | |||||  |||||||||||||    
T  17017021 ttttcaacatgctatgcttgcc 17017000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17132739 - 17132776
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  17132739 ttttacagggacgaaaatcaaaatgagcccaaattaca 17132776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 17547558 - 17547437
Alignment:
Q  141 tcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttc 240  Q
    ||||||||||| ||||||||| || |  | || |||||||| || ||||||| ||| | |||||||||||| ||||| |  ||| | ||  |||||||||    
T  17547558 tcttcttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttc 17547459  T
Q  241 tgttcaatttgctatgcttgcc 262  Q
    | |||||  |||||||||||||    
T  17547458 ttttcaacatgctatgcttgcc 17547437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37587366 - 37587403
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  37587366 ttttacagggacgaaaatcaaaatgagcccaaattaca 37587403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8391452 - 8391488
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattac 37  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  8391452 ttttacaaggacgaaaatcaaaacgcgtccaaattac 8391488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 9899653 - 9899689
Alignment:
Q  2 tttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||| | ||||||||||||    
T  9899653 tttacagggacgaaaatcaaaatgagcccaaattaca 9899689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 283
Target Start/End: Original strand, 17952 - 18094
Alignment:
Q  141 tcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttc 240  Q
    ||||||||||| ||||||||| || |  | || |||||||| || ||||||||||| | |||||||||||| ||||| |  ||| | || ||||||||||    
T  17952 tcttcttcttccaccaccaaactgaccctcaaacttcttattgacacaaagaatgaaagagttctctttgctgaagcatctaaacccgttatagactttc 18051  T
Q  241 tgttcaatttgctatgcttgccaattggcaccgtggttaagct 283  Q
    | |||||  ||||||||||||| || |||| ||| || |||||    
T  18052 ttttcaacatgctatgcttgcctataggcaacgtagtaaagct 18094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 253
Target Start/End: Complemental strand, 9180 - 9054
Alignment:
Q  130 ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatc 226  Q
    ||||||||||||||||| ||||| |||||||   |||| |  | || ||||| || || || | ||||||||||||||| ||||| ||||| | |||| |    
T  9180 ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagc 9081  T
Q  227 tgtaatagactttctgttcaatttgct 253  Q
    ||| ||||| ||||| |||||| ||||    
T  9080 tgtgatagattttcttttcaatctgct 9054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11337710 - 11337747
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11337710 ttttacagggacgaaaatcaaaacgggcccaaattaca 11337747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21984918 - 21984881
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  21984918 ttttacagggacgaaaatcaaaacgggcccaaattaca 21984881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41567922 - 41567959
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  41567922 ttttacagggacgaaaatcaaaacgggcccaaattaca 41567959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3843229 - 3843266
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  3843229 ttttacagggacgaaaatcaaaatgagcccaaattaca 3843266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4706694 - 4706657
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  4706694 ttttacagggacgaaaatcaaaatccgcccaaattaca 4706657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20016748 - 20016785
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  20016748 ttttacagggacgaaaatcaaaatgagcccaaattaca 20016785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21985577 - 21985614
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  21985577 ttttacagggacgaaaatcaaaacgggtccaaattaca 21985614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23966375 - 23966338
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  23966375 ttttacagggacgaaaatcaaaattcgcccaaattaca 23966338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43210198 - 43210161
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  43210198 ttttacaaggacggaaatcaaaacgcgcccaaattaca 43210161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44372612 - 44372649
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  44372612 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 44372649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44381468 - 44381505
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  44381468 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 44381505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 476981 - 476944
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  476981 ttttacagggacgaaaatcaaaacgggcccaaattaca 476944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29844490 - 29844525
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaatta 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29844490 ttttacaaggacgaaaatcaaaacgcgcccaaatta 29844525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5956158 - 5956195
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  5956158 ttttacaaggacgaaaatcaaaacacgcccaaattaca 5956195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22353268 - 22353305
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  22353268 ttttacagggacgaaaatcaaaatgcgctcaaattaca 22353305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24051315 - 24051278
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  24051315 ttttacagggacgaaaatcaaaattcgcccaaattaca 24051278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29846279 - 29846242
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29846279 ttttacaaggacgaaaatcaaaacgcgctcaaattaca 29846242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29979224 - 29979261
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  29979224 ttttacagggacgaaaatcaaaattcgcccaaattaca 29979261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11120269 - 11120232
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11120269 ttttacagggacgaaaatcaaaacgggcccaaattaca 11120232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24052410 - 24052447
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24052410 ttttacagggacgaaaatcaaaacgcgtccaaattaca 24052447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26710259 - 26710223
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattac 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26710259 ttttacagggacgaaaatcaaaacgggcccaaattac 26710223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26979993 - 26979957
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattac 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26979993 ttttacagggacgaaaatcaaaacgggcccaaattac 26979957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2320783 - 2320820
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  2320783 ttttacaaggacgaaaatcaaaacgcgctcaaattaca 2320820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4808620 - 4808657
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  4808620 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 4808657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15795722 - 15795759
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  15795722 ttttacagggacgaaaatcaaaatgagcccaaattaca 15795759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29627130 - 29627167
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  29627130 ttttacagggacgaaaatcaaaacggacccaaattaca 29627167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35988915 - 35988878
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  35988915 ttttacagggacgaaaatcaaaatgagcccaaattaca 35988878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4900317 - 4900280
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4900317 ttttacaaggacgaaaatcaaaacgcgcccaaattaca 4900280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7402889 - 7402926
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  7402889 ttttacagggacgaaaatcaaaacgcgtccaaattaca 7402926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50064671 - 50064708
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  50064671 ttttacaaggacgaaaatcaaaacgcgcccaaattaca 50064708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 53535598 - 53535635
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  53535598 ttttacagggacgaaaatcaaaacgggcccaaattaca 53535635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7402035 - 7402001
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaatt 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  7402035 ttttacagggacgaaaatcaaaacgcgtccaaatt 7402001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15807716 - 15807679
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  15807716 ttttacagggacgaaaatcaaaattcgcccaaattaca 15807679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38657887 - 38657850
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  38657887 ttttacagggacgaaaatcaaaacgaacccaaattaca 38657850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47848826 - 47848863
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  47848826 ttttacaaggacgaaaatcaaaatgcgcccaaattaca 47848863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47864549 - 47864512
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  47864549 ttttacagggacgaaaatcaaaattcgcccaaattaca 47864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51162911 - 51162948
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  51162911 ttttacagggacgaaaatcaaaacggacccaaattaca 51162948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52502465 - 52502428
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  52502465 ttttacagggacgaaaatcaaaatgagcccaaattaca 52502428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15951514 - 15951551
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  15951514 ttttacagggacgaaaatcaaaacgggcccaaattaca 15951551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31091331 - 31091368
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31091331 ttttacagggacgaaaatcaaaacgggcccaaattaca 31091368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35325764 - 35325801
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  35325764 ttttacagggacgaaaatcaaaatgcgcccaaattaca 35325801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4996895 - 4996932
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  4996895 ttttacagtgacgaaaatcaaaacgagcccaaattaca 4996932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9175741 - 9175778
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  9175741 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 9175778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9598268 - 9598305
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  9598268 ttttacaaggatgaaaatcaaaacgcgcccaaattaca 9598305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20289589 - 20289626
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  20289589 ttttacagggacgaaaatcaaaatgagcccaaattaca 20289626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23142865 - 23142828
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  23142865 ttttacagggacgaaaatcaaaacggacccaaattaca 23142828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25165959 - 25165922
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  25165959 ttttacagggacgaaaatcaaaattcgcccaaattaca 25165922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25166745 - 25166782
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  25166745 ttttacagggacgaaaatcaaaattcgcccaaattaca 25166782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26051530 - 26051493
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  26051530 ttttacagggacgaaaatcaaaatgagcccaaattaca 26051493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26052175 - 26052212
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  26052175 ttttacagggacgaaaatcaaaatgagcccaaattaca 26052212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37737609 - 37737646
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  37737609 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 37737646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44706970 - 44706933
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  44706970 ttttacagggacgaaaatcaaaacggacccaaattaca 44706933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 693 - 728
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaatta 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  693 ttttacaaggacgaaaatcaaaacgcgcccaaatta 728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5069 - 5032
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  5069 ttttacagggacgaaaatcaaaatgagcccaaattaca 5032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 356 - 393
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  356 ttttacagggacgaaaatcaaaatgagcccaaattaca 393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1140 - 1103
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||  |||||||||||||||||||||||||||||    
T  1140 ttttacatcgacgaaaatcaaaacgcgcccaaattaca 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10366 - 10329
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  10366 ttttacagggacgaaaatcaaaattcgcccaaattaca 10329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11137 - 11174
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  11137 ttttacagggacgaaaatcaaaattcgcccaaattaca 11174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 80669 - 80632
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  80669 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 80632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2238821 - 2238858
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  2238821 ttttacagggacgaaaatcaaaattcgcccaaattaca 2238858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21716500 - 21716463
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  21716500 ttttacagggacgaaaatcaaaatgagcccaaattaca 21716463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24558900 - 24558863
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  24558900 ttttacagggacgaaaatcaaaatgagcccaaattaca 24558863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24559551 - 24559588
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  24559551 ttttacagggacgaaaatcaaaatgagcccaaattaca 24559588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26882737 - 26882774
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  26882737 ttttacagggacgaaaatcaaaacggacccaaattaca 26882774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28917104 - 28917141
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  28917104 ttttacagggacgaaaatcaaaattcgcccaaattaca 28917141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29359346 - 29359309
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  29359346 ttttacaaggacgaaaatcaaaacgcgtccaaattaca 29359309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35908422 - 35908459
Alignment:
Q  1 ttttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  35908422 ttttacaaggacgaaaatcaaaactcgcccaaattaca 35908459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9276884 - 9276848
Alignment:
Q  2 tttacagggacgaaaatcaaaacgcgcccaaattaca 38  Q
    |||||||||||||||||||||| |||| |||||||||    
T  9276884 tttacagggacgaaaatcaaaatgcgctcaaattaca 9276848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University