View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10991_low_7 (Length: 231)

Name: NF10991_low_7
Description: NF10991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10991_low_7
NF10991_low_7
[»] chr6 (2 HSPs)
chr6 (7-222)||(17933277-17933494)
chr6 (59-121)||(24662477-24662539)
[»] chr3 (2 HSPs)
chr3 (7-222)||(32844307-32844526)
chr3 (118-195)||(23876952-23877029)
[»] chr7 (2 HSPs)
chr7 (118-222)||(366771-366875)
chr7 (118-187)||(7401966-7402035)
[»] chr8 (1 HSPs)
chr8 (129-187)||(11788405-11788463)
[»] chr1 (1 HSPs)
chr1 (133-222)||(42559859-42559948)
[»] chr5 (1 HSPs)
chr5 (118-222)||(27075893-27075997)
[»] chr2 (1 HSPs)
chr2 (118-222)||(26584764-26584868)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 17933277 - 17933494
Alignment:
Q  7 gagtagcaaaggctaacaaaggtatgaatcacaaagtgtcaaaccnnnnnnn--taggagtgaaacatcaacttcgtccttgagtttgtaaggattaatc 104  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||         |||||||||||||||| |||||| |||||||||| |||||||||||    
T  17933277 gagtaacaaaggctaacaaaggcatgaatcacaaagtgtcaaaccaaaaaaaaataggagtgaaacatcaccttcgttcttgagtttgcaaggattaatc 17933376  T
Q  105 aaattcgtcccccaattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcat 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  17933377 aaattcgtcctccaattagtccctgaatttaacacatgtccgtcaaattcatccctctgtccaatctctctgttagtgatgctaatgtgtcaatgtgcat 17933476  T
Q  205 gatgtgttgtgatgtcca 222  Q
    ||||||||||||||||||    
T  17933477 gatgtgttgtgatgtcca 17933494  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 24662477 - 24662539
Alignment:
Q  59 taggagtgaaacatcaacttcgtccttgagtttgtaaggattaatcaaattcgtcccccaatt 121  Q
    |||||||||| |||||||||||||||||| |||| | | ||   |||||||||||||||||||    
T  24662477 taggagtgaatcatcaacttcgtccttgaatttgcacgaatatgtcaaattcgtcccccaatt 24662539  T

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Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 32844526 - 32844307
Alignment:
Q  7 gagtagcaaaggctaacaaaggtatgaatcacaaagtgtcaaaccnnnnnnnta----ggagtgaaacatcaacttcgtccttgagtttgtaaggattaa 102  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||        |    ||| |||||||||||||||||||||||||||| |||||||||    
T  32844526 gagtaacaaaggctaacaaaggcatgaatcactaagtgtcaaaccaaaaaaaaaaaaaggaatgaaacatcaacttcgtccttgagtttgcaaggattaa 32844427  T
Q  103 tcaaattcgtcccccaattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgc 202  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  32844426 tcaaattcgtcctccaattagtccctaaatttaacacatgtccgtcaaattcatccctctgcccaatctctctgttagtgatgctaatgtgtcaatgtgc 32844327  T
Q  203 atgatgtgttgtgatgtcca 222  Q
    |||||||| |||||||||||    
T  32844326 atgatgtgctgtgatgtcca 32844307  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 23877029 - 23876952
Alignment:
Q  118 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtc 195  Q
    |||||||| |||||||||||| | |||| |||||||||| |||| |||||||| ||| |||||||| ||||| |||||    
T  23877029 aattagtctctgaatttaacaaacgtccatcaaattcatccctccgtccaatccctccgttagtgaggctaacgtgtc 23876952  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 366771 - 366875
Alignment:
Q  118 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 217  Q
    ||||||||||||||||||||| | |||  |||||||||| |||| |||||||| | | |||||||| ||| |  ||||  | |||||| |||||||||||    
T  366771 aattagtccctgaatttaacagacgtctatcaaattcatccctccgtccaatcccaccgttagtgaggctgacatgtcgttatgcatgttgtgttgtgat 366870  T
Q  218 gtcca 222  Q
    |||||    
T  366871 gtcca 366875  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 7401966 - 7402035
Alignment:
Q  118 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgct 187  Q
    |||| |||||||||||||||| | |||| ||||||||||  |||  |||||| |||| ||||||||||||    
T  7401966 aattcgtccctgaatttaacagacgtccatcaaattcatcactccatccaatatctccgttagtgatgct 7402035  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 11788405 - 11788463
Alignment:
Q  129 gaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgct 187  Q
    |||||||||| | |||| |||||||||| |||| ||||||| |||||||||||||||||    
T  11788405 gaatttaacagacgtccatcaaattcatccctccgtccaatatctctgttagtgatgct 11788463  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 42559948 - 42559859
Alignment:
Q  133 ttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgatgtcca 222  Q
    |||||| | |||| |||||||||| |||| ||||||||||||||||||||| ||| ||| |||    | |||| ||||||||||||||||    
T  42559948 ttaacagacgtccatcaaattcatccctccgtccaatctctctgttagtgaggctgatgcgtcgtcctacatgttgtgttgtgatgtcca 42559859  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 27075893 - 27075997
Alignment:
Q  118 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 217  Q
    ||||||| ||||||||||||| | |||| |||||||||| |||| || ||||| | | |||||||| | | | ||||||   ||||||||||| | ||||    
T  27075893 aattagttcctgaatttaacagacgtccatcaaattcatccctccgttcaatccccccgttagtgaggttgacgtgtcatcctgcatgatgtgctttgat 27075992  T
Q  218 gtcca 222  Q
    |||||    
T  27075993 gtcca 27075997  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 26584868 - 26584764
Alignment:
Q  118 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 217  Q
    ||||| ||||| ||||||| | | |||| |||||||||| |||| ||||| || ||||| |||||| ||| | |||||    |||||| |||||||||||    
T  26584868 aattaatccctcaatttaatagacgtccatcaaattcatccctccgtccattccctctggtagtgaggctgacgtgtcgtcctgcatgttgtgttgtgat 26584769  T
Q  218 gtcca 222  Q
    |||||    
T  26584768 gtcca 26584764  T

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