View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10991_low_8 (Length: 219)
Name: NF10991_low_8
Description: NF10991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10991_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 40659971 - 40660096
Alignment:
| Q |
3 |
aagaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctccaaacaggacaacaac |
102 |
Q |
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| T |
40659971 |
aagaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctccaaacaggacaacaac |
40660070 |
T |
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| Q |
103 |
caagttcaaccttcacaaagcatgac |
128 |
Q |
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| T |
40660071 |
caagttcaaccttcacaaagcatgac |
40660096 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 40660127 - 40660175
Alignment:
| Q |
158 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgt |
206 |
Q |
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| T |
40660127 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgt |
40660175 |
T |
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