View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_high_12 (Length: 430)
Name: NF10992_high_12
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_12 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 23 - 414
Target Start/End: Original strand, 11848834 - 11849225
Alignment:
| Q |
23 |
agggagagaagatggggtatccaatgataattacaacctttaatattaaaggcttgggggtgtttcaaagaaaataacattaaagatttagtgcgaagta |
122 |
Q |
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| T |
11848834 |
agggagagaagatcgggtatccaatgataattacaacctttaatattaaaggcttgggggtgtttcaaagaaaataacattaaagatttagtgcgaagta |
11848933 |
T |
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| Q |
123 |
ataaggttgattttttggctattcaagagacgaagatggaggagatttcgacttctttttgtcaaaatttatggggaagggaggattgtaattggacgtt |
222 |
Q |
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| T |
11848934 |
ataaggttgattttttggctattcaagagacgaagatggaggagatttcgacttctttttgtcaaaatttatggggaagggaggattgtaattgggcgtt |
11849033 |
T |
|
| Q |
223 |
tcttccttccgaaggtaatagtggaggtattctttctatttggagtaatattaataatgtaactaattgagcttttgttggagagggttatgtgggggtg |
322 |
Q |
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| T |
11849034 |
tcttccttccgaaggtaatagtggaggtattctttctatttagagtaatattaataatgtaactaattgagcttttgttggagagggttatgtgggggtg |
11849133 |
T |
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| Q |
323 |
tgcttggattccaaacttaaagttgaacattccatcagaccggagagtttctccaaattcgccaaattttggagatgttgtcctggtggctg |
414 |
Q |
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| T |
11849134 |
tgcttggattccaaacttaaagttgaacattccatcagaccggagagtttctccaaattcgccaaattttggagatgttgtcctggtggctg |
11849225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 8507857 - 8507784
Alignment:
| Q |
194 |
tggggaagggaggattgtaattggacgtttcttccttccgaaggtaatagtggaggtattctttctatttggag |
267 |
Q |
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| T |
8507857 |
tggggaagtgatgattgtgattgggagtttagaccttccgaaggtaatagtggtggaattctatctatttggag |
8507784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 50433316 - 50433348
Alignment:
| Q |
121 |
taataaggttgattttttggctattcaagagac |
153 |
Q |
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| T |
50433316 |
taataatgttgattttttggctattcaagagac |
50433348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 44 - 332
Target Start/End: Original strand, 12169375 - 12169665
Alignment:
| Q |
44 |
caatgataattacaacctttaatattaaaggcttggggg-tgtttcaaagaa-aataacattaaagatttagtgcgaagtaataaggttgattttttggc |
141 |
Q |
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| T |
12169375 |
caatgatcatcacaacctttaatattagaggtttggggggtgcttcaaagaggaacaaaattagagaattaatgcgaaacaataaggtggaatttttggc |
12169474 |
T |
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| Q |
142 |
tattcaagagacgaagatggaggagatttcgacttctttttgtcaaaatttatggggaagggaggattgtaattggacgtttcttccttccgaaggtaat |
241 |
Q |
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| T |
12169475 |
tattcaagaaacgaaaatggaggaggttacggataatttttgtcacaagttatggggaggggtggattgtgattgggcttttctcccttccgaaggtaac |
12169574 |
T |
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| Q |
242 |
agtggaggtattctttctatttggagtaatattaataatgtaactaattgagcttttgttggagagggttatgtgggggtgtgcttggatt |
332 |
Q |
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| T |
12169575 |
aatggaggtattctctctatttggagtaactctaacaatactactaattctatttttgttggagagggttatgtgggggtgtgtttggatt |
12169665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 29074650 - 29074578
Alignment:
| Q |
333 |
ccaaacttaaagttgaacattccatcagaccggagagtttctccaaattcgccaaattttggagatgttgtcctggtggctg |
414 |
Q |
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| T |
29074650 |
ccaaacttaaagttgaacattccatcagaccggagagt---------tttgccaaattttggagatgttgtcctggtggctg |
29074578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 29106352 - 29106313
Alignment:
| Q |
375 |
ccaaattcgccaaattttggagatgttgtcctggtggctg |
414 |
Q |
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| T |
29106352 |
ccaaattggccaaattttggagatgttgtcctggtggctg |
29106313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 414
Target Start/End: Complemental strand, 29895008 - 29894977
Alignment:
| Q |
383 |
gccaaattttggagatgttgtcctggtggctg |
414 |
Q |
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| T |
29895008 |
gccaaattttggagatgttgtcctggtggctg |
29894977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 68792 - 68868
Alignment:
| Q |
194 |
tggggaagggaggattgtaattggacgtttcttccttccgaaggtaatagtggaggtattctttctatttggagtaa |
270 |
Q |
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| T |
68792 |
tggggaggggaggattgtgattggacgtatcttccttccgttggaaatagttgaggtattttatcgctttggagtaa |
68868 |
T |
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