View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_high_18 (Length: 316)
Name: NF10992_high_18
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 5129457 - 5129731
Alignment:
| Q |
19 |
tatatttcagactcaggattcagaaacccttttcaaggagcagataaagactaagaagacaagatagatgaagaaaagcatatataagacatcaggaaac |
118 |
Q |
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| T |
5129457 |
tatatttcagactcaggattcaaaaacgcttttcaaggagcagataaagactaagaagacaagatagatgaagaaaagcatatataagacatcaggaaac |
5129556 |
T |
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| Q |
119 |
tgaatgataaagaactgtcttgtttttcctaatgaaggtaacaaggtagcaagtcattctccgaaaaccatagataatgactaatgaacagagattaaat |
218 |
Q |
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| T |
5129557 |
tgaatgataaa--actga---gcattaagcactc--ggcaacaaggtagcaagtcattctctgaaaaccatagataatgactaatgaacagagattaaag |
5129649 |
T |
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| Q |
219 |
tttacaataaaaagaaaagacatcatttgcatcctaaaacaagaactttcataaccctacctattgtatggaagttgcttcat |
301 |
Q |
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| T |
5129650 |
tttacaa-aaaaagaaaagacatcattttcatcctaaaacaagaactttcataaccctacctattgtatggaagttgcttcat |
5129731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 1601575 - 1601534
Alignment:
| Q |
34 |
ggattcagaaacccttttcaaggagcagataaagactaagaa |
75 |
Q |
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| T |
1601575 |
ggattcagaaacccttttcaaggagcagttaaagactaagaa |
1601534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 8527497 - 8527534
Alignment:
| Q |
34 |
ggattcagaaacccttttcaaggagcagataaagacta |
71 |
Q |
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| T |
8527497 |
ggattcagaaacccttttcaaggagcagttaatgacta |
8527534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 8534088 - 8534125
Alignment:
| Q |
34 |
ggattcagaaacccttttcaaggagcagataaagacta |
71 |
Q |
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| T |
8534088 |
ggattcagaaacccttttcaaggagcagttaatgacta |
8534125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 48363207 - 48363166
Alignment:
| Q |
34 |
ggattcagaaacccttttcaaggagcagataaagactaagaa |
75 |
Q |
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| T |
48363207 |
ggattcagaaacccttttcaaggagcagttaaagattaagaa |
48363166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 9441831 - 9441868
Alignment:
| Q |
34 |
ggattcagaaacccttttcaaggagcagataaagacta |
71 |
Q |
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| T |
9441831 |
ggattcagaaacccttttcaaggagcagttaatgacta |
9441868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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