View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10992_high_2 (Length: 652)

Name: NF10992_high_2
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10992_high_2
NF10992_high_2
[»] chr4 (5 HSPs)
chr4 (100-587)||(161574-162036)
chr4 (2-104)||(161447-161549)
chr4 (399-519)||(102746-102867)
chr4 (585-634)||(162120-162169)
chr4 (585-633)||(102940-102988)
[»] scaffold0013 (2 HSPs)
scaffold0013 (430-510)||(93578-93658)
scaffold0013 (586-633)||(93387-93434)
[»] chr7 (2 HSPs)
chr7 (424-510)||(13051643-13051729)
chr7 (586-633)||(13051841-13051888)
[»] chr3 (1 HSPs)
chr3 (416-491)||(12138439-12138514)
[»] chr8 (3 HSPs)
chr8 (438-510)||(5693519-5693591)
chr8 (586-634)||(5692755-5692803)
chr8 (586-634)||(5723099-5723147)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 100 - 587
Target Start/End: Original strand, 161574 - 162036
Alignment:
Q  100 gatagtttgtctataaaacccataccatcagtagagtaaatcaatgctagtttctcatgtacttcagaagaagaaagaaggagtaataaatcattacata 199  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  161574 gatagtttgtctataaaacccataccatcaatagagtaaatcaatgctagtttctcatgtacttcagaagaa---agaaggagtaataaatcattacata 161670  T
Q  200 tgttgagagataaccattaatgcaacaattatcaacagagaagcctcctcattcatgaatctggcagaacaaattgcccaagacacagaacaaaccggag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||    
T  161671 tgttgagagataaccattaatgcaacaattatcaacagagaagcctcctcattcatgaatctggcag---------------------aacaaaccggag 161749  T
Q  300 aagagtgattagatctccttgttgaaagatgtaaacagagttttaatgagtttacctagtctatgtaaacagtatgcctaaactgagttttatgtctaca 399  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  161750 aagagtgattagatctccttgttgaaagatgtaaacatagttt-aatgagtttacctagtctatgtaaacagtatgcctaaactgagttttatgtctaca 161848  T
Q  400 ttaatttcctacttgtaggtattctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttact 499  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  161849 ttaatttcctacttgtaggttttctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttact 161948  T
Q  500 gtcaccaggtaggtgttatcattctagtctatttcaacacacatttatttacctattttgaacatgatgcatgcaaatataattgttt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  161949 gtcaccaggtaggtgttatcattctagtctatttcaacacacatttatttacctattttgaacatgatgcatgcatatatatttgttt 162036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 161447 - 161549
Alignment:
Q  2 aaacccaaaaagacaacatgaatataaaaacaacaaattagcatgaatacaatctcgaatggcatgaagcaaagttccaacctccacacaacacattaga 101  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  161447 aaacccaaaaagacaacatcaatataaaaacaacaaattagcatgaatacagtctcgaatggcatgaagcaaagttctaacctccacacaacacattaga 161546  T
Q  102 tag 104  Q
    |||    
T  161547 tag 161549  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 399 - 519
Target Start/End: Original strand, 102746 - 102867
Alignment:
Q  399 attaatttcctac-ttgtaggtattctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacattta 497  Q
    |||||||| |||| ||| |||| |||||||| |||||||| ||||| |||||||| || ||||||| ||| |||||||||||||||||||||||||||||    
T  102746 attaattttctacattgcaggttttctgtgtctacattactggacatcttgattccgtcttcccacgagaacatcgcaaagagattcttcgttacattta 102845  T
Q  498 ctgtcaccaggtaggtgttatc 519  Q
    ||||||||| ||| ||| ||||    
T  102846 ctgtcaccaagtatgtgctatc 102867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 585 - 634
Target Start/End: Original strand, 162120 - 162169
Alignment:
Q  585 ttttgaagaatgaagatggtggatgggggctacaaattgagggtcacagt 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  162120 ttttgaagaatgaagatggtggatgggggctacaaattgagggtcacagt 162169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 585 - 633
Target Start/End: Original strand, 102940 - 102988
Alignment:
Q  585 ttttgaagaatgaagatggtggatgggggctacaaattgagggtcacag 633  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  102940 ttttgaagaatgaagatggaggatgggggctacacattgagggtcacag 102988  T

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Target: scaffold0013 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 430 - 510
Target Start/End: Complemental strand, 93658 - 93578
Alignment:
Q  430 tacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttactgtcaccaggta 510  Q
    |||||||| ||||| |||||||||||||||||||  || ||||| |||||||||||||||||||| || ||||||||||||    
T  93658 tacattactggacatcttgattctgtattcccaccggaacatcgtaaagagattcttcgttacatatattgtcaccaggta 93578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 586 - 633
Target Start/End: Complemental strand, 93434 - 93387
Alignment:
Q  586 tttgaagaatgaagatggtggatgggggctacaaattgagggtcacag 633  Q
    |||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  93434 tttgcagaatgaagatggagggtgggggctacacattgagggtcacag 93387  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 424 - 510
Target Start/End: Original strand, 13051643 - 13051729
Alignment:
Q  424 tgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttactgtcaccaggta 510  Q
    ||||| |||||||| ||||| |||||||  |||||||||||||||||| ||||||||||||||| |||||| || ||||| ||||||    
T  13051643 tgtgtttacattacgggacatcttgatttggtattcccacaagagcattgcaaagagattcttcattacatatattgtcatcaggta 13051729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 586 - 633
Target Start/End: Original strand, 13051841 - 13051888
Alignment:
Q  586 tttgaagaatgaagatggtggatgggggctacaaattgagggtcacag 633  Q
    |||||||||||||||||| || ||||| ||||| ||||||||||||||    
T  13051841 tttgaagaatgaagatggagggtggggtctacacattgagggtcacag 13051888  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 12138514 - 12138439
Alignment:
Q  416 aggtattctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgtta 491  Q
    |||| |||||| | |||||||||||||| ||||||||| ||||| || |||||||||| || ||||||||||||||    
T  12138514 aggttttctgtatgtacattacaggacatcttgattctatattctcaaaagagcatcgtaaggagattcttcgtta 12138439  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 5693591 - 5693519
Alignment:
Q  438 aggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttactgtcaccaggta 510  Q
    |||||| |||||||| ||||||||  ||||| |||| ||||||||||| |||||||| || ||||| ||||||    
T  5693591 aggacatcttgattcggtattccccaaagagtatcggaaagagattctccgttacatatattgtcatcaggta 5693519  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 634
Target Start/End: Complemental strand, 5692803 - 5692755
Alignment:
Q  586 tttgaagaatgaagatggtggatgggggctacaaattgagggtcacagt 634  Q
    |||||||||||||||||| |||||||| |||||  | ||||||||||||    
T  5692803 tttgaagaatgaagatggaggatggggactacacgtagagggtcacagt 5692755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 634
Target Start/End: Complemental strand, 5723147 - 5723099
Alignment:
Q  586 tttgaagaatgaagatggtggatgggggctacaaattgagggtcacagt 634  Q
    |||||||||||||||||| |||||||| |||||  | ||||||||||||    
T  5723147 tttgaagaatgaagatggaggatggggactacacgtagagggtcacagt 5723099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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