View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_high_21 (Length: 310)
Name: NF10992_high_21
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 11848857 - 11848560
Alignment:
| Q |
1 |
ttggataccccatcttctctcccttatgaccttcttatccacatctgcaacctccatattttccaacctatccttattttccttccccggtgtagtgaac |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11848857 |
ttggatacccgatcttctctcccttatgaccttcttatccacatctgcaacctgcatattttccaccctatccttattttccttccccggtgtagtgaac |
11848758 |
T |
|
| Q |
101 |
gaaaatcccatcacattttgcctctcaaacaatgatgaagcctccaacttcttcaaaggatctatttccccattcatcaaagatgattccggtacttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848757 |
gaaaatcccatcacattttgcctctcaaacaatgatgaagcctccaacttcttcaaaggatctatttccccattcatcaaagatgattccggtacttggg |
11848658 |
T |
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| Q |
201 |
tgacttcttcatcaagaataagtctaaaccccgatgatggagaaaccgccatcccggacccgttgccactatcatctttcttcctcccactctgtctc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11848657 |
tgacttcttcatcaagaataagtctaaaccccgatgatggagaaaccgccatcccggacccgttgccactatcatctttcttcctcccactatgtctc |
11848560 |
T |
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