View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_high_23 (Length: 285)
Name: NF10992_high_23
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 10821431 - 10821213
Alignment:
| Q |
21 |
agtgtgctactagtaaagttttattccttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtg |
120 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10821431 |
agtgtgctactagtaaagttttattctttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttattttttt-aattagcttgtg |
10821333 |
T |
|
| Q |
121 |
aaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttctgtgtatataaaatgtcgattgatttttgctttc |
220 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
10821332 |
aaaatccaggatcaattgttgaattaaatagatttaaaagaatgggttctttgaatcactttcttctgtgtataaaaaatgtcgattgatttttgttttc |
10821233 |
T |
|
| Q |
221 |
atcacttatttgatataact |
240 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
10821232 |
atcacttatttgatataact |
10821213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 44722115 - 44721933
Alignment:
| Q |
32 |
agtaaagttttattccttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtgaaaatccatga |
131 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||| |||||||||| |
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| T |
44722115 |
agtaaagttttcttctttgtgaaaactctttgaatcactttttcccctttgaatcactttcagatctt-tctttttttattagtttgtg-aaatccatga |
44722018 |
T |
|
| Q |
132 |
tcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt |
214 |
Q |
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| T |
44722017 |
tcaattgctgaattatatagattagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt |
44721933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 19614436 - 19614535
Alignment:
| Q |
116 |
ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc-tgtgtatataaaatgtcgattgattttt |
214 |
Q |
| |
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|||| |||||||||||||||| ||||||| ||| |||| |||||| ||||||||| |||||| |||| |||||||| ||||||| ||||||||||| |
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| T |
19614436 |
ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttcttgtgtataaaaaatgttgattgattttt |
19614535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 43304872 - 43305054
Alignment:
| Q |
32 |
agtaaagttttattccttgtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtgaaaatccatga |
131 |
Q |
| |
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||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||| |||||||||| |
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| T |
43304872 |
agtaaagttttcttctttgtgaaaactctttgaatcactttttcccctttgaatcactttcagatctt-tctttttttattagtttgtg-aaatccatga |
43304969 |
T |
|
| Q |
132 |
tcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt |
214 |
Q |
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||||||| ||||||| | |||| |||||| ||||| ||||||||||||| ||| |||||||| | ||||| ||||||||||| |
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| T |
43304970 |
tcaattgctgaattatatagattagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt |
43305054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 11662099 - 11662000
Alignment:
| Q |
116 |
ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc-tgtgtatataaaatgtcgattgattttt |
214 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| |||| |||||| ||||||||| |||||| |||| |||||||| ||||||| ||||||||||| |
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| T |
11662099 |
ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttcttgtgtataaaaaatgttgattgattttt |
11662000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 9162395 - 9162487
Alignment:
| Q |
125 |
tccatgatcaa-ttgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt |
214 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||||||| ||| |||||||| | ||||| ||||||||||| |
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| T |
9162395 |
tccatgatcaaattgttgaattaaatagattagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt |
9162487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 9162141 - 9162232
Alignment:
| Q |
125 |
tccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt |
214 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||||| || || ||||||||||||| ||| |||||||| | ||||| ||||||||||| |
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| T |
9162141 |
tccatgatcaattgctgaattaaatagattagaaagaaaggattatttgaatcactttattctttgtgtataaataatgttgattgattttt |
9162232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 30671765 - 30671879
Alignment:
| Q |
116 |
ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttct--gtgtatataaaatgtcgattgatttt |
213 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| |||| ||||| ||||||||| |||||| ||||| ||||||| ||||||| |||||||||| |
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| T |
30671765 |
ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagatcaagttctttgattcacttgcttctttgtgtataaaaaatgttgattgatttt |
30671864 |
T |
|
| Q |
214 |
tgctttcatcactta |
228 |
Q |
| |
|
| ||| |||||||| |
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|
| T |
30671865 |
tttttttatcactta |
30671879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 22061203 - 22061303
Alignment:
| Q |
116 |
ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgatttt |
213 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| |||| |||||| ||||||||| |||||| |||| | |||||| ||||||| |||||||||| |
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| T |
22061203 |
ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttctttatgtataaaaaatgttgattgatttt |
22061302 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
22061303 |
t |
22061303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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