View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10992_high_29 (Length: 253)

Name: NF10992_high_29
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10992_high_29
NF10992_high_29
[»] chr5 (18 HSPs)
chr5 (1-158)||(38010633-38010790)
chr5 (1-158)||(29989957-29990114)
chr5 (1-158)||(13478064-13478221)
chr5 (1-154)||(13015380-13015533)
chr5 (1-158)||(13086748-13086905)
chr5 (1-158)||(13421029-13421186)
chr5 (1-129)||(10292897-10293023)
chr5 (18-154)||(1826258-1826393)
chr5 (26-109)||(37881185-37881268)
chr5 (35-153)||(11607588-11607705)
chr5 (51-153)||(19357330-19357432)
chr5 (35-148)||(33858592-33858704)
chr5 (47-153)||(9827788-9827894)
chr5 (35-153)||(39570097-39570214)
chr5 (27-137)||(33271630-33271739)
chr5 (107-158)||(35622939-35622990)
chr5 (35-98)||(42148201-42148263)
chr5 (94-158)||(35622811-35622875)
[»] chr3 (27 HSPs)
chr3 (1-158)||(47186170-47186327)
chr3 (1-159)||(31187089-31187247)
chr3 (1-159)||(42664667-42664825)
chr3 (1-157)||(34029310-34029466)
chr3 (27-149)||(33509684-33509805)
chr3 (40-152)||(50934501-50934613)
chr3 (31-154)||(47426349-47426471)
chr3 (35-153)||(44380254-44380371)
chr3 (27-140)||(37742738-37742850)
chr3 (100-159)||(21963073-21963132)
chr3 (45-145)||(35094554-35094655)
chr3 (28-101)||(6022998-6023071)
chr3 (87-153)||(10018671-10018737)
chr3 (85-151)||(32319468-32319534)
chr3 (94-163)||(53440536-53440605)
chr3 (107-158)||(46489652-46489703)
chr3 (87-153)||(10179868-10179934)
chr3 (35-129)||(17466297-17466390)
chr3 (107-160)||(34955066-34955119)
chr3 (94-158)||(42273329-42273393)
chr3 (94-158)||(46489767-46489831)
chr3 (105-152)||(43689404-43689451)
chr3 (107-158)||(53440669-53440720)
chr3 (87-153)||(10123211-10123277)
chr3 (57-151)||(39498744-39498838)
chr3 (113-158)||(6053733-6053778)
chr3 (100-129)||(22136927-22136956)
[»] chr6 (8 HSPs)
chr6 (3-158)||(34245562-34245717)
chr6 (4-152)||(11113557-11113700)
chr6 (27-152)||(1211890-1212014)
chr6 (45-154)||(5403940-5404048)
chr6 (32-153)||(32644888-32645007)
chr6 (88-154)||(11753166-11753232)
chr6 (113-158)||(12800378-12800423)
chr6 (92-128)||(10126564-10126600)
[»] chr1 (16 HSPs)
chr1 (1-158)||(8809659-8809816)
chr1 (1-156)||(35998249-35998404)
chr1 (27-154)||(29119370-29119496)
chr1 (27-153)||(32676136-32676261)
chr1 (27-153)||(2569037-2569161)
chr1 (1-146)||(35534413-35534554)
chr1 (60-153)||(25161309-25161402)
chr1 (4-153)||(8462129-8462276)
chr1 (94-157)||(18056136-18056199)
chr1 (107-152)||(5581281-5581326)
chr1 (56-152)||(6223052-6223148)
chr1 (61-124)||(3688917-3688980)
chr1 (71-149)||(7214500-7214578)
chr1 (100-154)||(46435571-46435625)
chr1 (119-152)||(16679835-16679868)
chr1 (16-80)||(16679765-16679829)
[»] chr4 (22 HSPs)
chr4 (1-158)||(52012773-52012930)
chr4 (1-154)||(9799382-9799535)
chr4 (10-159)||(47943152-47943302)
chr4 (4-153)||(21260794-21260942)
chr4 (27-152)||(33249420-33249544)
chr4 (27-154)||(12473703-12473829)
chr4 (27-154)||(12528112-12528238)
chr4 (27-153)||(22343337-22343462)
chr4 (35-153)||(35869625-35869742)
chr4 (60-129)||(46719954-46720023)
chr4 (59-152)||(52910126-52910219)
chr4 (1-68)||(46720200-46720268)
chr4 (56-161)||(49999662-49999767)
chr4 (36-153)||(51811914-51812030)
chr4 (76-153)||(55590482-55590559)
chr4 (67-152)||(34829168-34829253)
chr4 (107-158)||(28092740-28092791)
chr4 (92-149)||(49998486-49998543)
chr4 (94-159)||(54277634-54277699)
chr4 (94-158)||(28092855-28092919)
chr4 (113-159)||(36634529-36634575)
chr4 (29-87)||(33174581-33174636)
[»] chr8 (9 HSPs)
chr8 (5-158)||(1514798-1514951)
chr8 (35-146)||(18168392-18168503)
chr8 (35-146)||(18631949-18632060)
chr8 (27-153)||(41179609-41179734)
chr8 (27-154)||(24337876-24338002)
chr8 (1-152)||(32825855-32826005)
chr8 (27-145)||(4708353-4708470)
chr8 (35-153)||(11254082-11254198)
chr8 (111-158)||(40530538-40530585)
[»] chr2 (16 HSPs)
chr2 (1-159)||(10163470-10163634)
chr2 (27-153)||(34392127-34392252)
chr2 (51-150)||(7381695-7381794)
chr2 (3-84)||(3668031-3668112)
chr2 (57-153)||(21603959-21604055)
chr2 (27-110)||(23863849-23863931)
chr2 (49-153)||(37357988-37358092)
chr2 (36-148)||(14565908-14566019)
chr2 (4-110)||(41095809-41095914)
chr2 (45-124)||(4779614-4779692)
chr2 (94-159)||(37811085-37811150)
chr2 (4-154)||(4775633-4775783)
chr2 (35-102)||(25275676-25275741)
chr2 (112-149)||(3668346-3668383)
chr2 (2-54)||(43154124-43154176)
chr2 (2-54)||(43159344-43159396)
[»] scaffold0044 (1 HSPs)
scaffold0044 (158-236)||(88059-88137)
[»] scaffold0032 (1 HSPs)
scaffold0032 (4-153)||(34194-34341)
[»] chr7 (7 HSPs)
chr7 (35-153)||(35341536-35341653)
chr7 (32-154)||(48250153-48250274)
chr7 (27-153)||(48072389-48072512)
chr7 (35-133)||(32694624-32694721)
chr7 (60-149)||(31306951-31307041)
chr7 (89-154)||(40856391-40856456)
chr7 (56-159)||(40893115-40893219)
[»] scaffold0229 (1 HSPs)
scaffold0229 (27-152)||(13051-13176)
[»] scaffold0263 (1 HSPs)
scaffold0263 (51-152)||(23168-23263)
[»] scaffold0519 (1 HSPs)
scaffold0519 (35-153)||(11195-11311)
[»] scaffold0464 (1 HSPs)
scaffold0464 (94-160)||(6417-6483)
[»] scaffold0041 (1 HSPs)
scaffold0041 (56-159)||(73065-73169)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 38010633 - 38010790
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38010633 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcac 38010732  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  38010733 actcttattggccaatgttatataacattggtaccttaatggtacacaagtggtgtcc 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 29990114 - 29989957
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  29990114 tgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcac 29990015  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  29990014 actcttattggtcaatgttatataacattgataccttaatggtacacaagtggtgtcc 29989957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 13478064 - 13478221
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  13478064 tgttatataacattagctaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaatatttataaagtaacaatggtatgtggcac 13478163  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  13478164 actcttattggtcaatgttatataacattggttccttaatggtacacaagtggtgtcc 13478221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 13015533 - 13015380
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  13015533 tgttatataacattagccaattaagatgtgacatgtggcacatactttaaaaaatatatatcaaataaaatatttataaagtaacattggtatgtggcac 13015434  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13015433 actcttattggtcaatgttatataacattggtaccttaatggtacacaagtggt 13015380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 13086905 - 13086748
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||| |||||||    
T  13086905 tgttatataacattagctaattaaggtgtgacatgtggcacacactttaaaaaatacatatcaaataaaatatttataaaataacattggtatgtggcac 13086806  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13086805 actcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 13086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 13421029 - 13421186
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||  ||  ||    
T  13421029 tgttatataacattagtcaagtaaggtgtgtcatgtggcatacactttaaaaaacatatattaaataaagcatttataaagtaacattgatatttgatac 13421128  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||||    
T  13421129 actcttattgatcaatgttatataacattgataccttaatggtacacaagtgatgtcc 13421186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 10293023 - 10292897
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||||||  | ||||||||||||  | ||| ||| ||||||| |||||||||||    
T  10293023 tgttatataacattggccaattaaggtgtgccacgtggcacaccctttaaaaa--aaatatcaaataaaacacttacaaaataacattagtacgtggcac 10292926  T
Q  101 actcttattggtcaatgttatataacatt 129  Q
    | ||||||||| |||||||||||||||||    
T  10292925 attcttattggccaatgttatataacatt 10292897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 1826393 - 1826258
Alignment:
Q  18 caattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatg 117  Q
    |||||||  |||||||||||||||| ||||||||||| ||||||||||||||| || || ||||||| ||||||| ||| |||||||| ||||  |||||    
T  1826393 caattaaaatgtgccatgtggcacatactttaaaaaa-atatatcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatg 1826295  T
Q  118 ttatataacattagtaccttaatggtacacaagtggt 154  Q
     |||||| |||| |||| |||||||||||||||||||    
T  1826294 gtatataccattggtactttaatggtacacaagtggt 1826258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 37881268 - 37881185
Alignment:
Q  26 gtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttatt 109  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  37881268 gtgtaccatgtggcacacattttgaaaaacatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 11607588 - 11607705
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||| |||||||||| | ||||||||||| |||||| |||| ||||    
T  11607588 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtac 11607686  T
Q  135 cttaatggtacacaagtgg 153  Q
    |||||||||| ||||||||    
T  11607687 cttaatggtatacaagtgg 11607705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 19357330 - 19357432
Alignment:
Q  51 aaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaag 150  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||    
T  19357330 aaaaaatatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaag 19357429  T
Q  151 tgg 153  Q
    |||    
T  19357430 tgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 33858592 - 33858704
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||| ||||||  ||| ||||    
T  33858592 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtac 33858690  T
Q  135 cttaatggtacaca 148  Q
    ||||||||||||||    
T  33858691 cttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 9827894 - 9827788
Alignment:
Q  47 ttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtaca 146  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||   || | |||||| |||| ||||||||||||||||    
T  9827894 ttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtaca 9827795  T
Q  147 caagtgg 153  Q
    |||||||    
T  9827794 caagtgg 9827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 39570097 - 39570214
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||| |||||| ||||  |||    
T  39570097 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatac 39570195  T
Q  135 cttaatggtacacaagtgg 153  Q
     |||||| |||||||||||    
T  39570196 tttaatgatacacaagtgg 39570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 33271739 - 33271630
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||| ||||| ||  |||||||||| ||||||||||||||| |||||| ||||||||||| ||  || |||||||| ||||| ||||| |||||| |    
T  33271739 tgtgccacgtggcgcatcctttaaaaaa-atatatcaaataaagcatttatcaagtaacattgatagatgacacactctaattggccaatgatatatatc 33271641  T
Q  127 attagtacctt 137  Q
    ||| |||||||    
T  33271640 attggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 35622939 - 35622990
Alignment:
Q  107 attggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||||||||| ||| |  |||||||||||||||||||||    
T  35622939 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 42148263 - 42148201
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggc 98  Q
    |||| |||| |||||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  42148263 gtggtacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 35622875 - 35622811
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||||||||| | ||||  ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  35622875 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 47186327 - 47186170
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47186327 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcac 47186228  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  47186227 actcttattggccaatgttatataacattggtaccttaatggtacacaagtggtgtcc 47186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 31187089 - 31187247
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||||    
T  31187089 tgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggcac 31187188  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcca 159  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  31187189 actcttattggtcaatgttatataacattggtaccttaatggtacataagtggtgtcca 31187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 42664825 - 42664667
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||    
T  42664825 tgttatataacattagctaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggtatgtggcac 42664726  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcca 159  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  42664725 actcttattggtcaatgttatataactttggtaccttaatggtacacaagtggtgtcca 42664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 34029310 - 34029466
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||    
T  34029310 tgttatataacattagccaattaaggtgtgatatgtgacacacactttaaaaaacatatatcaaataaaacatttataaagtaacattagtatgtggcac 34029409  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtc 157  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||    
T  34029410 actcttattgatcaatgttatataacattggtaccttaatggtaaacaagtggtgtc 34029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 33509805 - 33509684
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||| || |||||||||| ||||||| |||||||||||| ||||||||||| ||||||      
T  33509805 tgtgccatgtggcacatcctttaaaaaa-atacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatact 33509707  T
Q  127 attagtaccttaatggtacacaa 149  Q
    |||||||||||||||||||||||    
T  33509706 attagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 50934613 - 50934501
Alignment:
Q  40 acacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaa 139  Q
    |||| ||||||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||| |||||| |||| |||||||||    
T  50934613 acaccctttaaataaaatatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T
Q  140 tggtacacaagtg 152  Q
    |||||||||||||    
T  50934513 tggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 47426471 - 47426349
Alignment:
Q  31 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacatta 130  Q
    ||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||| || ||| |||||||| ||||| ||||| ||||||  |||     
T  47426471 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactattg 47426373  T
Q  131 gtaccttaatggtacacaagtggt 154  Q
    ||||||||||||||||||||||||    
T  47426372 gtaccttaatggtacacaagtggt 47426349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 44380371 - 44380254
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||| |||| || ||| |||||| | ||||||||||  |||||| |||| ||||    
T  44380371 gtggcacaccctttaaaaaag-tatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtac 44380273  T
Q  135 cttaatggtacacaagtgg 153  Q
    |||||||||||||||||||    
T  44380272 cttaatggtacacaagtgg 44380254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 37742850 - 37742738
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| |||  ||| |||||||||||| |||||| ||||| ||||  ||||| |||||| |    
T  37742850 tgtgccacgtggcacactctttaaaaaa-atatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatatacc 37742752  T
Q  127 attagtaccttaat 140  Q
    ||| ||||||||||    
T  37742751 attggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 21963073 - 21963132
Alignment:
Q  100 cactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcca 159  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtgatgtcca 21963132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 35094655 - 35094554
Alignment:
Q  45 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactc--ttattggtcaatgttatataacattagtaccttaatgg 142  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||  | ||| ||||||| |||||| || | |||| |||||||    
T  35094655 ctttaaaaaa-atatatcaaataaaatatttataaagtaacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatgg 35094557  T
Q  143 tac 145  Q
    |||    
T  35094556 tac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 6023071 - 6022998
Alignment:
Q  28 gtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcaca 101  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||||| ||| ||||||||    
T  6023071 gtgccacgtggcacaccctttaaaaaatatatatcaaataaagtacttacaaaataacattagtatgtggcaca 6022998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 10018671 - 10018737
Alignment:
Q  87 ttggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    |||||| |||||||||| ||||||  ||||| ||||||||||| |||| ||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtgg 10018737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  85 cattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagt 151  Q
    |||| ||| |||||||||||| ||||| ||||| |||||| |||| |||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 53440605 - 53440536
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtccaaaat 163  Q
    |||||||||| | |||||||| |||||||||||||| ||| |  ||||||||||||||||||||| ||||    
T  53440605 gtggcacactttcattggtcagtgttatataacattggtatcccaatggtacacaagtggtgtccgaaat 53440536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 46489703 - 46489652
Alignment:
Q  107 attggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||||||||| ||| |  |||||||||||||||||||||    
T  46489703 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 10179868 - 10179934
Alignment:
Q  87 ttggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    |||||| |||||||||||| ||||  ||||| |||||| |||| |||| ||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 10179934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 17466390 - 17466297
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacatt 129  Q
    |||||| || |||||||||| ||||||||| ||||  |||||||||||||||||| || ||| |||||||| ||||  ||||| |||||| ||||    
T  17466390 gtggcataccctttaaaaaa-atatatcaactaaatcatttataaagtaacattgataggtgacacactctaattgaccaatgatatataccatt 17466297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 34955119 - 34955066
Alignment:
Q  107 attggtcaatgttatataacattagtaccttaatggtacacaagtggtgtccaa 160  Q
    ||||| ||||||||||||||||| ||| |  |||||||||||||||||||||||    
T  34955119 attggccaatgttatataacattggtatcccaatggtacacaagtggtgtccaa 34955066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 42273393 - 42273329
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||||||||| | ||||  ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  42273393 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 42273329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 46489767 - 46489831
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||||||||| | ||||  ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  46489767 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 43689451 - 43689404
Alignment:
Q  105 ttattggtcaatgttatataacattagtaccttaatggtacacaagtg 152  Q
    ||||||||||||||||||||||||| ||| |  |||||||||||||||    
T  43689451 ttattggtcaatgttatataacattggtatcacaatggtacacaagtg 43689404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 53440669 - 53440720
Alignment:
Q  107 attggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||| |||||||||||||||||| ||| | |||||||||||||| |||||||    
T  53440669 attgatcaatgttatataacattggtatcctaatggtacacaagaggtgtcc 53440720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 10123211 - 10123277
Alignment:
Q  87 ttggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    |||||| |||||||||| ||||||  || || |||||||||||  ||| ||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtgg 10123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 39498744 - 39498838
Alignment:
Q  57 tatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagt 151  Q
    ||||| ||||||| |||||||||| |||||| | || ||| |||||| | ||||  ||||  |||||| |||| |||| ||||||||||||||||    
T  39498744 tatattaaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 6053733 - 6053778
Alignment:
Q  113 caatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  6053733 caatgttatataacattggtatcccaatggtacacaagtggtgtcc 6053778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 22136927 - 22136956
Alignment:
Q  100 cactcttattggtcaatgttatataacatt 129  Q
    ||||||||||||||||||||||||||||||    
T  22136927 cactcttattggtcaatgttatataacatt 22136956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 34245717 - 34245562
Alignment:
Q  3 ttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacac 102  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34245717 ttatataacattagccaattaaggtgtgtcatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacac 34245618  T
Q  103 tcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34245617 ttttattggtcaatgttatataacattaataccttaatggtacacaagtggtgtcc 34245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 11113700 - 11113557
Alignment:
Q  4 tatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacact 103  Q
    ||||||||||| | |||||||||||||||||||||| ||  ||||||||||     ||||||||||| | ||| ||||||||||| ||| ||| ||||||    
T  11113700 tatataacattggtcaattaaggtgtgccatgtggcgcatcctttaaaaaa-----atcaaataaagcacttacaaagtaacattagtatgtgacacact 11113606  T
Q  104 cttattggtcaatgttatataacattagtaccttaatggtacacaagtg 152  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  11113605 cttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 1211890 - 1212014
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||| |||||| |    
T  1211890 tgtgccacgtggcacaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatacc 1211988  T
Q  127 attagtaccttaatggtacacaagtg 152  Q
    ||| ||||||||||||||||||||||    
T  1211989 attggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 5403940 - 5404048
Alignment:
Q  45 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggta 144  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||| |||||| ||||| | ||  ||||  |||||| |||||||||||||||||||    
T  5403940 ctttaaaaaa-atatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggta 5404038  T
Q  145 cacaagtggt 154  Q
    ||||||||||    
T  5404039 cacaagtggt 5404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 32644888 - 32645007
Alignment:
Q  32 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattag 131  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||| ||| |||||  | ||||| ||||| ||||||  ||       
T  32644888 catgtggcacaccctttaaaaaa-atataacaaataaagtattt-taaagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcga 32644985  T
Q  132 taccttaatggtacacaagtgg 153  Q
    || |||||||||||||| ||||    
T  32644986 tatcttaatggtacacaggtgg 32645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 11753232 - 11753166
Alignment:
Q  88 tggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    ||||| |||| ||||||| ||||| | ||| |||||| |||| ||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggt 11753166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 12800378 - 12800423
Alignment:
Q  113 caatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  12800378 caatgttatataacattggtatcccaatggtacacaagtggtgtcc 12800423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 10126564 - 10126600
Alignment:
Q  92 acgtggcacactcttattggtcaatgttatataacat 128  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  10126564 acgtggcacacccttattggacaatgttatataacat 10126600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 8809659 - 8809816
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  8809659 tgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtacgtggcac 8809758  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8809759 actcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 8809816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 35998404 - 35998249
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||  | ||||||| |||||||| || |||||||    
T  35998404 tgttatataacattagccaattaagatgtgccatgtggcacacactttaaaaaacatatataaaataaaacacttataaaataacattgatatgtggcac 35998305  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgt 156  Q
    |||||||||  |||||||||||||||||| |||||||||||||| |||||||||||    
T  35998304 actcttattaatcaatgttatataacattggtaccttaatggtatacaagtggtgt 35998249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 29119370 - 29119496
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||| || || |||||||||||| ||||| ||||| |||||| |    
T  29119370 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatatacc 29119468  T
Q  127 attagtaccttaatggtacacaagtggt 154  Q
    ||| ||||||||||||||||||||||||    
T  29119469 attggtaccttaatggtacacaagtggt 29119496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 32676261 - 32676136
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  || ||| ||||| ||||| |||||| |    
T  32676261 tgtgccatgtggcacatgctttaaaaaa-atatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatatacc 32676163  T
Q  127 attagtaccttaatggtacacaagtgg 153  Q
    ||| |||||||||||||||||||||||    
T  32676162 attggtaccttaatggtacacaagtgg 32676136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 2569161 - 2569037
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    |||||||  |||||||| ||||||||||  |||||||||||||| |||  ||| |||||||||||| |||||||||||| |||||  |||| |||||| |    
T  2569161 tgtgccacatggcacaccctttaaaaaa--tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatatacc 2569064  T
Q  127 attagtaccttaatggtacacaagtgg 153  Q
    ||| |||||||||||||||||||||||    
T  2569063 attggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 35534554 - 35534413
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||| ||| ||||||||||||||| |||||||||||| |||||||||    |||| |||||||  | ||||||| | ||||| ||| |||||||    
T  35534554 tgttatataatattggccaattaaggtgtgtcatgtggcacaccctttaaaaa----atattaaataaaacacttataaattgacattagtatgtggcac 35534459  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtaca 146  Q
    ||||| | ||  ||||||||||||||||| ||| ||||||| ||||    
T  35534458 actctcagtgtccaatgttatataacattggtatcttaatgataca 35534413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 25161402 - 25161309
Alignment:
Q  60 atcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    ||||||||||  |||||||||||||||||| || |||||||||| | ||||||||||| |||||| ||||   || ||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtgg 25161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 8462276 - 8462129
Alignment:
Q  4 tatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacact 103  Q
    |||||| ||||  ||||||||  |||| || ||||||| | ||||||||||  ||||| |||||||  ||||||||| ||||||||||| ||||||||||    
T  8462276 tatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaag-tatattaaataaaacatttataaaataacattggtaggtggcacact 8462178  T
Q  104 cttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
     | |||| |||||| |||||| |||| |||| |||||  |||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtgg 8462129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 18056136 - 18056199
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtc 157  Q
    |||||||||| | |||||||||| |||||||||||| |||  ||||||||||||||||||||||    
T  18056136 gtggcacactttcattggtcaatattatataacattggtagtttaatggtacacaagtggtgtc 18056199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 5581326 - 5581281
Alignment:
Q  107 attggtcaatgttatataacattagtaccttaatggtacacaagtg 152  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||    
T  5581326 attggtcaatgttatataacattagtatcctaatggtacacaagtg 5581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 6223148 - 6223052
Alignment:
Q  56 atatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtg 152  Q
    |||||||||||||| || ||||||| |||||||| ||  || |||||  | |||| |||||| |||||||||||  ||| |||||||||||||||||    
T  6223148 atatatcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacacaagtg 6223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 3688917 - 3688980
Alignment:
Q  61 tcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatata 124  Q
    |||||||||  ||||||||||||||||||||| || | ||||||| ||||||||||| ||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggttgtacactctaattggtcaatgatatata 3688980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 7214500 - 7214578
Alignment:
Q  71 tatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaa 149  Q
    |||||||||||||| || | || ||| |||||||| ||||  ||||  ||||||  |||||||||||||||||||||||    
T  7214500 tatttataaagtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaa 7214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 46435571 - 46435625
Alignment:
Q  100 cactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    |||||| ||||| ||||  |||||| |||| ||||||||||||||||||||||||    
T  46435571 cactctaattggccaattgtatataccattggtaccttaatggtacacaagtggt 46435625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 16679835 - 16679868
Alignment:
Q  119 tatataacattagtaccttaatggtacacaagtg 152  Q
    ||||||||||| ||||||||||||||||||||||    
T  16679835 tatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 16679829 - 16679765
Alignment:
Q  16 gccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaa 80  Q
    |||||||| | |||| || ||| ||||| |||||||||| ||||||||||||||| | |||||||    
T  16679829 gccaattaggatgtgtcacgtgacacaccctttaaaaaatatatatcaaataaagcacttataaa 16679765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 52012930 - 52012773
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  52012930 tgttatataacattagctaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcac 52012831  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52012830 acttttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 52012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 9799382 - 9799535
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||  ||||||||||||||||||||| |||||||    
T  9799382 tgttatataacattagctaattaaggtgtgacatgtgacacacactttaaaaaacatatattaaataaaacatttataaagtaacattggtatgtggcac 9799481  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    | |||| |||||||||||||||||||||| |||||||||||||| |||||||||    
T  9799482 attcttgttggtcaatgttatataacattggtaccttaatggtatacaagtggt 9799535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 47943302 - 47943152
Alignment:
Q  10 acattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttatt 109  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||| | |||||    
T  47943302 acattagctaattaaggtgtgacatgtggcacacattttaaaaaacatatatcaaataaaatatttataaaataatattggtatgtggcacatttttatt 47943203  T
Q  110 ggtc-aatgttatataacattagtaccttaatggtacacaagtggtgtcca 159  Q
    |||| ||| |||||||||||| |||  ||||||||||||||||||||||||    
T  47943202 ggtcaaatattatataacattggtattttaatggtacacaagtggtgtcca 47943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 21260942 - 21260794
Alignment:
Q  4 tatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacact 103  Q
    |||||||||||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| ||| ||||||    
T  21260942 tatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtgacacact 21260844  T
Q  104 cttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    || ||||| ||||| |||||| |||| |||||||||||||| | ||||||    
T  21260843 ctaattggccaatgatatatatcattggtaccttaatggtatataagtgg 21260794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 33249420 - 33249544
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  33249420 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatatacc 33249518  T
Q  127 attagtaccttaatggtacacaagtg 152  Q
    ||| ||||||||||||||||||||||    
T  33249519 atttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 12473829 - 12473703
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||| |||||| |    
T  12473829 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12473731  T
Q  127 attagtaccttaatggtacacaagtggt 154  Q
    ||| |||||||||||||| |||||||||    
T  12473730 attggtaccttaatggtatacaagtggt 12473703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 12528238 - 12528112
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||| |||||| |    
T  12528238 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12528140  T
Q  127 attagtaccttaatggtacacaagtggt 154  Q
    ||| |||||||||||||| |||||||||    
T  12528139 attggtaccttaatggtatacaagtggt 12528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 22343462 - 22343337
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    |||| |||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||| ||  || |||||||| ||||||||||| |||||| |    
T  22343462 tgtgtcatgtggcacatcctttaaaata-atatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatatacc 22343364  T
Q  127 attagtaccttaatggtacacaagtgg 153  Q
    |||  ||||||||||||||||||||||    
T  22343363 attgataccttaatggtacacaagtgg 22343337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 35869625 - 35869742
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||| ||||||||||||| |||||||| | | ||||||||||| |||||| |||| ||||    
T  35869625 gtggcacaccctttaaaaaag-tatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtac 35869723  T
Q  135 cttaatggtacacaagtgg 153  Q
    |||||||||||||||||||    
T  35869724 cttaatggtacacaagtgg 35869742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 46720023 - 46719954
Alignment:
Q  60 atcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacatt 129  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacatt 46719954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  59 tatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtg 152  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||| | ||||| ||||| ||||||||||| ||||| | ||||||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 46720268 - 46720200
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaa-aaaacatatatcaaataa 68  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  46720268 tgttatataacattagtcaattaaggtgtgtcatgtggcacacactttaaaaaaacatatatcaaataa 46720200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 49999662 - 49999767
Alignment:
Q  56 atatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtg 155  Q
    ||||||||||||||| ||||||||| ||||||||||| ||| |||||||| ||||  |||||  | |||||||||||| ||| |||||||||||||| |     
T  49999662 atatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtgtta 49999761  T
Q  156 tccaaa 161  Q
    ||||||    
T  49999762 tccaaa 49999767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 51812030 - 51811914
Alignment:
Q  36 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtacc 135  Q
    |||||||| |||||||||| |||||||||| |||  ||||||||||||||||||||| |||||| ||||| ||||| ||||  |||||| | ||  ||||    
T  51812030 tggcacaccctttaaaaaa-atatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactctaattggccaataatatatatctttgatacc 51811932  T
Q  136 ttaatggtacacaagtgg 153  Q
    |||||||||||| |||||    
T  51811931 ttaatggtacacgagtgg 51811914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 55590559 - 55590482
Alignment:
Q  76 ataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    ||||||||||||||||| ||| |||||| | |||| |||||| |||||| |||| |||||||||||||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtgg 55590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 34829168 - 34829253
Alignment:
Q  67 aaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtg 152  Q
    |||| ||||||||||||||||||||| ||| |||||| | ||||| || || |||||| |||| |||||||||| ||||| |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtg 34829253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 28092791 - 28092740
Alignment:
Q  107 attggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||||||||| ||| |  |||||||||||||||||||||    
T  28092791 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 49998543 - 49998486
Alignment:
Q  92 acgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaa 149  Q
    ||||||||||| || ||||| ||||| ||||||| ||| |||||||||||||||||||    
T  49998543 acgtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 54277634 - 54277699
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcca 159  Q
    |||||||||| | ||||  ||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  54277634 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcca 54277699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 28092855 - 28092919
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||||||||| | ||||  ||||||||||||||||| ||| |  |||||||||||||||||||||    
T  28092855 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 36634529 - 36634575
Alignment:
Q  113 caatgttatataacattagtaccttaatggtacacaagtggtgtcca 159  Q
    ||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  36634529 caatgttatataacattggtatcccaatggtacacaagtggtgtcca 36634575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 33174636 - 33174581
Alignment:
Q  29 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacat 87  Q
    ||||| ||||||||| |||||||||   |||||||||||||  ||||||||||||||||    
T  33174636 tgccacgtggcacaccctttaaaaa---tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 1514951 - 1514798
Alignment:
Q  5 atataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactc 104  Q
    ||||||||||| |||||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||  ||||||||||||||||||||| |||| ||||||    
T  1514951 atataacattaaccaattaaggtgtgacatatggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggtacactc 1514852  T
Q  105 ttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  1514851 ttattgatcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 1514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 18168503 - 18168392
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||| |||||| |||| ||||    
T  18168503 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18168404  T
Q  135 cttaatggtaca 146  Q
    ||||||||||||    
T  18168403 cttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 18632060 - 18631949
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||| |||||| |||| ||||    
T  18632060 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18631961  T
Q  135 cttaatggtaca 146  Q
    ||||||||||||    
T  18631960 cttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 41179609 - 41179734
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||||||||||||  | |||||||| |||||| |||||||  |||||||||||||||| |||| ||| |||||| | ||||| ||||| |||||| |    
T  41179609 tgtgccatgtggcacatccattaaaaaa-atatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatc 41179707  T
Q  127 attagtaccttaatggtacacaagtgg 153  Q
    ||| |||||||||||||||||||||||    
T  41179708 attggtaccttaatggtacacaagtgg 41179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 24337876 - 24338002
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||| || ||||||||||||||||||  ||||||||||| ||||  | ||| |||||| |    
T  24337876 tgtgctatgtggcacaccctttaaaaat-atatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatatacc 24337974  T
Q  127 attagtaccttaatggtacacaagtggt 154  Q
    |||  ||||||||| |||||||||||||    
T  24337975 attgctaccttaatagtacacaagtggt 24338002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 32825855 - 32826005
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||  ||| |||||||||| |||| |||||| ||||  |||| ||||| ||||||||||||||  |  |||||| |||||||| || ||| ||     
T  32825855 tgttatatataattggccaattaagatgtgtcatgtgacacaaccttttaaaaa-atatatcaaataaaacacatataaaataacattgatatgtgacat 32825953  T
Q  101 actcttattggtcaatgttatataacattagtaccttaatggtacacaagtg 152  Q
    ||||| ||||| ||||| |||| ||||||  ||| |||||||||||||||||    
T  32825954 actctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 4708353 - 4708470
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||  ||||||||||||||||||||| ||| |||||| | |||||   ||| |||||  |    
T  4708353 tgtgccacgtggcacaccctttaaaaat-atatatcaaataaaacatttataaagtaacattggtaggtgacacactttaattggcgcatgatatatgcc 4708451  T
Q  127 attagtaccttaatggtac 145  Q
    ||| |||||||| ||||||    
T  4708452 attggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 11254082 - 11254198
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||| |||||| |||| |||     
T  11254082 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11254179  T
Q  135 cttaatggtacacaagtgg 153  Q
     ||||||||||||||||||    
T  11254180 tttaatggtacacaagtgg 11254198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 40530538 - 40530585
Alignment:
Q  111 gtcaatgttatataacattagtaccttaatggtacacaagtggtgtcc 158  Q
    ||||||||||||||||||| ||| || |||| ||||||||||||||||    
T  40530538 gtcaatgttatataacattggtatctcaatgttacacaagtggtgtcc 40530585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 10163634 - 10163470
Alignment:
Q  1 tgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcac 100  Q
    |||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||  ||| |||||||    
T  10163634 tgttatataacattagtcaattaaggtatgccatgtagcacatactttaaaaaacatatatcaaataaattatttataaagtaatatcagtatgtggcac 10163535  T
Q  101 actcttattggtcaatgttatataacatt------agtaccttaatggtacacaagtggtgtcca 159  Q
    | | |||||||||||||||||||||||||       |||||||||||||||| ||||||||||||    
T  10163534 atttttattggtcaatgttatataacattggtacaggtaccttaatggtacataagtggtgtcca 10163470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 34392127 - 34392252
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |    
T  34392127 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatatacc 34392225  T
Q  127 attagtaccttaatggtacacaagtgg 153  Q
    ||| |||||| ||||||||||||||||    
T  34392226 attggtacctcaatggtacacaagtgg 34392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 7381794 - 7381695
Alignment:
Q  51 aaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaag 150  Q
    |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||| ||||  |||||| |||| ||||||||||||||||||||    
T  7381794 aaaaaatatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 3668031 - 3668112
Alignment:
Q  3 ttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaa 84  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  3668031 ttatataatattagccaattaagatgtgccatgtggcactcactttaaaaaacatatataaaataaagcacttataaagtaa 3668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 21604055 - 21603959
Alignment:
Q  57 tatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||||| | ||||||||||| |||||| |||| |||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 21603959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 23863849 - 23863931
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattg 110  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  23863849 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtggcacactctaattg 23863931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 37357988 - 37358092
Alignment:
Q  49 aaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacaca 148  Q
    |||||| | |||| |||||||| |||||||||||||||||| || ||| |||||||| ||| ||||||| |||||| |||| ||||||||||| ||||||    
T  37357988 aaaaaaaaaatattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacaca 37358087  T
Q  149 agtgg 153  Q
    |||||    
T  37358088 agtgg 37358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 14565908 - 14566019
Alignment:
Q  36 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtacc 135  Q
    |||||||  ||||||||||| |||||||||| ||||| ||||||| ||| ||||||| || |||||||||  ||| |||||| ||||||||||| |||||    
T  14565908 tggcacatcctttaaaaaac-tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtacc 14566006  T
Q  136 ttaatggtacaca 148  Q
    ||| |||||||||    
T  14566007 ttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 41095809 - 41095914
Alignment:
Q  4 tatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacact 103  Q
    |||||| |||| |||| ||| |||||||||||||||| ||  ||||||||| || |||||||||||| ||||||||||||||||||||| ||||  ||||    
T  41095809 tatataccattggccatttagggtgtgccatgtggcataccttttaaaaaa-atctatcaaataaagcatttataaagtaacattggtaggtggtgcact 41095907  T
Q  104 cttattg 110  Q
    || ||||    
T  41095908 ctaattg 41095914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 4779692 - 4779614
Alignment:
Q  45 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatata 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || | |||||||| | | || |||||| ||||||    
T  4779692 ctttaaaaaa-atatatcaaataaagtatttataaagtaacattgttaggcggcacactataagtgatcaatggtatata 4779614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 37811150 - 37811085
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtcca 159  Q
    |||||||||| | ||||| ||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  37811150 gtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtggtgtcca 37811085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 4775783 - 4775633
Alignment:
Q  4 tatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtattta-taaagtaacattggtacgtggcacac 102  Q
    |||||| ||||  ||||||||  ||||||||||||||||  |||||||||| |||||| |||||||  | ||| |||||||| |||||||  ||  |||     
T  4775783 tatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaa-atatattaaataaaacaattaataaagtaagattggtagatgagacat 4775685  T
Q  103 tcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    ||| ||||| ||||  |||||| |||| ||| |||||||||||| |||||||    
T  4775684 tctaattggccaataatatatatcattggtagcttaatggtacataagtggt 4775633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 25275676 - 25275741
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacac 102  Q
    ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| || |||||||||    
T  25275676 gtggcacatcctttaaaaaag-tatatcaaataaagtattta-aaagtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 3668346 - 3668383
Alignment:
Q  112 tcaatgttatataacattagtaccttaatggtacacaa 149  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  3668346 tcaatgttatataacattggtaccttaatgatacacaa 3668383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 43154124 - 43154176
Alignment:
Q  2 gttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaa 54  Q
    |||||||||||||  ||||| | ||||||||| ||||||||| ||||||||||    
T  43154124 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttaaaaaa 43154176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 43159396 - 43159344
Alignment:
Q  2 gttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaa 54  Q
    |||||||||||||  ||||| | ||||||||| ||||||||| ||||||||||    
T  43159396 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttaaaaaa 43159344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 88059 - 88137
Alignment:
Q  158 caaaatatacatagtgttcgccaaccctttattgactcatttcctttcactttctcgccaacagaaaatttgttgtctg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  88059 caaaatatacatagtgttcgccaaccctttattgactcatttcctttcactttctcgccaacagaaaatatgttgtctg 88137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 34341 - 34194
Alignment:
Q  4 tatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacact 103  Q
    |||||||||||| |||||||   |||| || ||| ||||| ||||||||||  ||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  34341 tatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa--tatatcaaataaaatatttataaagtaatattggtaagtggcacact 34244  T
Q  104 cttattggtcaatgttatataacattagtaccttaatggtacacaagtgg 153  Q
    || ||||| ||||  |||||| |||| |||||||||||||||||||||||    
T  34243 ctaattggccaataatatataccattggtaccttaatggtacacaagtgg 34194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 35341653 - 35341536
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||| |||||| |||| ||||    
T  35341653 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtac 35341555  T
Q  135 cttaatggtacacaagtgg 153  Q
    |||||||||||||||||||    
T  35341554 cttaatggtacacaagtgg 35341536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 48250274 - 48250153
Alignment:
Q  32 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattag 131  Q
    ||||| ||| || |||||||||| | ||||||||||||| || |||||||||||||||||| |||||||||||| ||||  ||||| |||||| |||| |    
T  48250274 catgtagcataccctttaaaaaaaa-atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattgg 48250176  T
Q  132 taccttaatggtacacaagtggt 154  Q
    |||||||||||||||||||||||    
T  48250175 taccttaatggtacacaagtggt 48250153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 48072512 - 48072389
Alignment:
Q  27 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataac 126  Q
    ||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||||||||  | |||||||||||| |||| ||||||   ||||      
T  48072512 tgtgccacgtggcacaccctttaaaaaa-atacatcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatg--gtatact 48072416  T
Q  127 attagtaccttaatggtacacaagtgg 153  Q
    ||| |||||||||| ||||||||||||    
T  48072415 attggtaccttaatagtacacaagtgg 48072389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 32694624 - 32694721
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagta 133  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||  ||| ||||||| |||   ||||| |||||| ||||||||    
T  32694624 gtggcacaccctttaaaaaa-atatatcaaataaagaatttataaagtaacattgatagatgggacactctaatttaccaatggtatatatcattagta 32694721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  60 atcaaataaagtatttataaagtaacattggtacgtggcacactct-tattggtcaatgttatataacattagtaccttaatggtacacaa 149  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| |  ||||| ||||| |||||| ||||  ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 40856456 - 40856391
Alignment:
Q  89 ggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    |||| ||| |||||||| |||| |||||  |||||| |||||||||||||||| |||| |||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtggt 40856391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 40893115 - 40893219
Alignment:
Q  56 atatatcaaataaa-gtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    |||||||||||||| | |||||||||||||||||| ||  ||  ||| ||| ||||  ||||| |||||| ||||| ||| || |||||| |||||||||    
T  40893115 atatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtggt 40893214  T
Q  155 gtcca 159  Q
     ||||    
T  40893215 atcca 40893219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 13051 - 13176
Alignment:
Q  27 tgtgccatgtggcaca-cactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataa 125  Q
    ||||||| |||||||| | |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||| ||||||     
T  13051 tgtgccacgtggcacaaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatac 13149  T
Q  126 cattagtaccttaatggtacacaagtg 152  Q
    |||| ||||||||||||||||||||||    
T  13150 cattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 23168 - 23263
Alignment:
Q  51 aaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaag 150  Q
    |||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||| ||||      | ||||||||||||||||||||    
T  23168 aaaaaatatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaag 23261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 11311 - 11195
Alignment:
Q  35 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtac 134  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||| |||||| |||| |||     
T  11311 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11214  T
Q  135 cttaatggtacacaagtgg 153  Q
     ||||||||||||||||||    
T  11213 tttaatggtacacaagtgg 11195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 6483 - 6417
Alignment:
Q  94 gtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggtgtccaa 160  Q
    |||||||||  ||||||| |||||||||||||||||  || |  |||||||||||||||||| ||||    
T  6483 gtggcacacctttattggccaatgttatataacattgatatcccaatggtacacaagtggtgcccaa 6417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 73169 - 73065
Alignment:
Q  56 atatatcaaataaa-gtatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattagtaccttaatggtacacaagtggt 154  Q
    |||||||||||||| | |||||||||||||||||| ||  ||  ||| ||| ||||  ||||| |||||| ||||| ||| || |||||| |||||||||    
T  73169 atatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtggt 73070  T
Q  155 gtcca 159  Q
     ||||    
T  73069 atcca 73065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University