View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_high_33 (Length: 237)
Name: NF10992_high_33
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 11582251 - 11582465
Alignment:
| Q |
1 |
tcctcgcctgacaaaaaagaaattataaaagctagaaatacatcaggaaagattgttgatcaaatctgcctcttcctccatagatctcacttattagact |
100 |
Q |
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| T |
11582251 |
tcctcgcctcacagaaaagaaattataaaagctaaaagtatatcagaaaatattgctgatcaaatctgcctcttcctccatagaactcacttattagact |
11582350 |
T |
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| Q |
101 |
ttgtaagaaaatataagaaaacgatgggtttagggaggtgatttttgtttaactcttagtgacataagcttcacctttttcctttatcatttgacaaatt |
200 |
Q |
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| T |
11582351 |
ttgtaagaaaatataagaaa----tgggtttggggaggtgatttttgtttaactcttagtgacataagcttcacctttttcctttatcatttgacaaatt |
11582446 |
T |
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| Q |
201 |
acaataataacaccttaat |
219 |
Q |
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||||||||||||||||||| |
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| T |
11582447 |
acaataataacaccttaat |
11582465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11588569 - 11588617
Alignment:
| Q |
1 |
tcctcgcctgacaaaaaagaaattataaaagctagaaatacatcaggaa |
49 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
11588569 |
tcctcgcctgacagaaaagaaattataaaagctagaagtacatcaggaa |
11588617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 11588690 - 11588759
Alignment:
| Q |
90 |
cttattagactttgtaagaaaatataagaaaacgatgggtttagggaggtgatttttgtttaactcttagt |
160 |
Q |
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||||||||||||||||||||| ||||||||||||| | || | ||||||| |||||||||||||||||| |
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| T |
11588690 |
cttattagactttgtaagaaattataagaaaacgaagacgtt-gagaggtgaattttgtttaactcttagt |
11588759 |
T |
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