View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_high_36 (Length: 212)
Name: NF10992_high_36
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_36 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 4257811 - 4257633
Alignment:
| Q |
17 |
cagagatttgttcatgaacatcttcatccatcacatgacaaaaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatggattcgaca |
116 |
Q |
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| T |
4257811 |
cagagatttgttcatgaccatcttcatccatcacatgacaaaaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatggattcgaca |
4257712 |
T |
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| Q |
117 |
gcttgtcgcttaaccatcatattgaacacgggagacatgaaccaaacttctgtggatcaactctgtcaaatattcctct |
195 |
Q |
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| T |
4257711 |
gcttgtcgctttaccatcatagtgaacacgggagacatgaaccaaacttctgtggatcaactctgtcaaatattcctct |
4257633 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 2760274 - 2760223
Alignment:
| Q |
58 |
aaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga |
109 |
Q |
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| T |
2760274 |
aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatgga |
2760223 |
T |
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Target: scaffold0691 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 5223 - 5281
Alignment:
| Q |
51 |
atgacaaaaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga |
109 |
Q |
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| T |
5223 |
atgacaaaaagttaaatccttcatttttctaatgatcacttcacgcaataaatcatgga |
5281 |
T |
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