View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10992_high_5 (Length: 601)
Name: NF10992_high_5
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 13 - 601
Target Start/End: Original strand, 33805669 - 33806255
Alignment:
| Q |
13 |
caaagggaaggccattatggtagttgagactaagaaggttagcaaagagatgaacatggagttcaataatgaaaaggcagaagatgctgatgaatcttct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33805669 |
caaagggaaggccattatggtagttgagactaagaaggttagcaaagagatgaacatggagtttaataatgaaaaggcagaagatgctgatgaatcttct |
33805768 |
T |
|
| Q |
113 |
tctgaaggttctgaatttgtagaagatattgagattagggaggaaaacattgatgatgactctgtggaagaagtcaacaataacacagtgtgatcaagac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33805769 |
tctgaaggttctgaatttgtagaagatattgagattagggaggaaaacattgatgatgactctgtggaagaagtcaacaataacacagtgtgatcaagac |
33805868 |
T |
|
| Q |
213 |
ttggagaacaaactatttttgcaggaatcttgggccaatatggctaaagatgatgatactgaagcaagactactaactgatattgagagagagttttcaa |
312 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||| |
|
|
| T |
33805869 |
ttggagaacaaactatttttggaggaatcttgggccaatatggctaaagatgatgatactgaagcaagactgctagctgatatt--gagagagtttccaa |
33805966 |
T |
|
| Q |
313 |
agaatgccgatgattttcaattagtggtaacaaagaggaagaagaagcaacaaagatcagcaaacaacaaatatgcaactagatcaaggattggtaaaac |
412 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33805967 |
agaatgctgatgattttcaattagtggtaacaaagaggaagaagaagcaacaaagatcagcaaacaacaaatatgcaactagatcaaggattggtaaaac |
33806066 |
T |
|
| Q |
413 |
aaatccttcacaataaagagttttttctagaatgtaaggggtttagctaacgcctccactagattagctcttaagaggtttcttgatgttaataaaccaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806067 |
aaatccttcacaataaagagttttttctggaatgtaaggggtttagctaacgcccccactagattagctcttaagaggtttcttgatgttaataaaccaa |
33806166 |
T |
|
| Q |
513 |
aatttgttttattagtgaaccatggttggagcatgattctcttccgagagtttggtttagtagacttggtggcaaacttttcggttcta |
601 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33806167 |
attttgttttattagtgaaccatggttggagcatgattctcttcctagagtttggtttagtagacatggtgacaaacttttcggttcta |
33806255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University