View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10992_high_8 (Length: 588)
Name: NF10992_high_8
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 112 - 572
Target Start/End: Complemental strand, 33761000 - 33760525
Alignment:
| Q |
112 |
ggagtataagagaga--tattagaatgttacaaatttaattggttacatgcctttacctaccgactgtacttctaactcaaatttgacaatgcaacatat |
209 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33761000 |
ggagtataagaaagaaatattagaatgttacaaatttaattggttacatgcctcaacctaccgaccgtacttctaactcaaatttgacaatgcaacatat |
33760901 |
T |
|
| Q |
210 |
-------------gccaatattgaccaatctattgacttttcttctttttattgtctatatatactctaggataaggatggtgaaaacaatattaagcag |
296 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33760900 |
tttgtcaacatatgccaatatcgaccaatctattgacttttcttctttttattgtcgatatatactctaggataaggatggtgaaaacaatattaagcag |
33760801 |
T |
|
| Q |
297 |
caatattttatattataccacaacaacaataatcattatgagtacacaaaatttaattgctaggaagcattatgttcttgtacatggtgcttgccatggt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33760800 |
caatattttatattataccacaacaacaataatcattatgagtacacaaaatttaattgctaggaagcattatgttcttgtacatggtgcttgccatggt |
33760701 |
T |
|
| Q |
397 |
gcttggagttggtacaagatcaagccacgtttagaatctgctggtcatgtggtcacagtaattgacctttcagcttctggaaccaacttgaagaaacttg |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33760700 |
gcttggagttggtacaagatcaagccacgtttagaatctgctggtcatgtggttacagtacttgacctttcagcttctggaaccaacttgaagaaacttg |
33760601 |
T |
|
| Q |
497 |
aagatgttgatacaatttcagaatactctgaaacattgttgaagctaatggcaacaattccacaaaatgaaaaggt |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33760600 |
aagatgttgatacaatttcagaatactctgaaccattgttgaagctaatggcaacaattccgcaaaatgaaaaggt |
33760525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 33762860 - 33762803
Alignment:
| Q |
9 |
gagagagatgaaaagagagaataagaacacaataaaaatactccatacatttcaaaat |
66 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33762860 |
gagagagatgaaaggagagaataagaacacaataaaagtactccatacatttcaaaat |
33762803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 47682799 - 47682766
Alignment:
| Q |
46 |
atactccatacatttcaaaatataaacaaatttt |
79 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
47682799 |
atactccatacgtttcaaaatataaacaaatttt |
47682766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 6832925 - 6833005
Alignment:
| Q |
363 |
gcattatgttcttgtacatggtgcttgccatggtgcttggagttggtacaagatcaagccacgtttagaatctgctggtca |
443 |
Q |
| |
|
||||| |||||| ||||||||| || || ||||| |||| |||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
6832925 |
gcattttgttctggtacatggttctggcatgggtgcctggaattggtacaagcttaagccacgtttagaatcatctggtca |
6833005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 6842153 - 6842229
Alignment:
| Q |
360 |
gaagcattatgttcttgtacatggtgcttgccatggtgcttggagttggtacaagatcaagccacgtttagaatctg |
436 |
Q |
| |
|
|||||||| |||||| |||||||||| | || ||| |||||||||||||||||| | || |||| |||||||||| |
|
|
| T |
6842153 |
gaagcattttgttctagtacatggtgttagcgttggagcttggagttggtacaagcttaaaccacagttagaatctg |
6842229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University