View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_1 (Length: 744)
Name: NF10992_low_1
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 17 - 731
Target Start/End: Complemental strand, 43494592 - 43493878
Alignment:
| Q |
17 |
agtttgaccttgccatgtctcacagtgacaatgtgattttccatcaccttgatgtggttgaccctaaaagcatatcatctcttgcaaatttcatcaaaat |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43494592 |
agtttgaccttgccatgtctcacagtgacaaagtgattttccatcaccttgatgtggttgaccctaaaagcatatcatctcttgcaaatttcatcaaaat |
43494493 |
T |
|
| Q |
117 |
tcattttgaaaaacttgatatcttggtatggtttcattaactaacactcacattcttctttgctgtgtatgcctttttatagttcattgctcttttcttt |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43494492 |
tcattttggaaaacttgatatcttggtatggtttcattaactaacactcacattcttctttgctgtgtatgcctttttatagttcattactcttttcttt |
43494393 |
T |
|
| Q |
217 |
ccagaacaaacctaattataatgaaatgtttgtatttggtataggtgaataatgctgggcttctaactgagaatgaggaattaacagaagcaattcttaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43494392 |
ccagaacaaacctaattataatgaaatgtttgtatttggtataggtgaataatgctgggcttctaactgagaatgaggaattaacagaagcaattcttaa |
43494293 |
T |
|
| Q |
317 |
aacaaactactatggacccaagggattaatcaaaacactttttcctcttctccaattttccagctcaccaagaattgtcaatgtttcctcaaccgtggga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43494292 |
aacaaactactatggacccaagggattaatcaaaacactttttcctcttctccaattttccagctcaccaagaattgtcaatgtttcctcaaccgtggga |
43494193 |
T |
|
| Q |
417 |
aggctaaaggtatatatgtgatactaaacacactattaaataactaaacccggtgacttgaaatgtagatccttctcaatttttgtcactaaactatgat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43494192 |
aggctaaaggtatatatgtgatactaaacacactattaaataactaaacccggtgacttgaaatgtagatccttctcaatttttgtcactaaactatgat |
43494093 |
T |
|
| Q |
517 |
aacaaagaaaacaaatgtgtagcgagatatttaactaaatgattgaactcaagtactggttaataaattctaaatccagatgaatcgtttgaaagaatcc |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43494092 |
aacaaagaaaacaaatgtgtagcgagatatttaactaaatgattgaactcaagtactggttaataaattctaaatccggatgaatcgtttgaaagaatcc |
43493993 |
T |
|
| Q |
617 |
gagttgaaacaatcattggtcaaactttacctacctcttaaacaaacttaaaattaccaaaatactcttcccttaaatcgtagggttaagacaaaaagaa |
716 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43493992 |
gagttaaaacaatcattggtcaaactttacctacctcttaagcaaacataaaattaccaaaatactcttcccttaaatcgtagggttaagacaaaaagaa |
43493893 |
T |
|
| Q |
717 |
aattattagtggcct |
731 |
Q |
| |
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||||||||||||||| |
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| T |
43493892 |
aattattagtggcct |
43493878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 11877955 - 11877851
Alignment:
| Q |
313 |
ttaaaacaaactactatggacccaagggattaatcaaaacactttttcctcttctccaattttccagctcaccaagaattgtcaatgtttcctcaaccgt |
412 |
Q |
| |
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||||||||||||| |||||| |||||| |||| || ||||| |||| |||||||| |||| |||||||||| | ||||||||||||||||| || | |
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| T |
11877955 |
ttaaaacaaactattatggagccaaggacttaactgaagcacttattccccttctccagctttcaagctcaccaaaagttgtcaatgtttcctcatccat |
11877856 |
T |
|
| Q |
413 |
gggaa |
417 |
Q |
| |
|
||||| |
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|
| T |
11877855 |
gggaa |
11877851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 11892962 - 11892858
Alignment:
| Q |
313 |
ttaaaacaaactactatggacccaagggattaatcaaaacactttttcctcttctccaattttccagctcaccaagaattgtcaatgtttcctcaaccgt |
412 |
Q |
| |
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||||||||||||| |||||| |||||| |||| || ||||| |||| |||||||| |||| |||||||||| | ||||||||||||||||| || | |
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| T |
11892962 |
ttaaaacaaactattatggagccaaggacttaactgaagcacttattccccttctccagctttcaagctcaccaaaagttgtcaatgtttcctcatccat |
11892863 |
T |
|
| Q |
413 |
gggaa |
417 |
Q |
| |
|
||||| |
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|
| T |
11892862 |
gggaa |
11892858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 11895371 - 11895267
Alignment:
| Q |
313 |
ttaaaacaaactactatggacccaagggattaatcaaaacactttttcctcttctccaattttccagctcaccaagaattgtcaatgtttcctcaaccgt |
412 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| || ||||| |||| |||||||| |||| |||||||||| | ||||||||||||||||| || | |
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| T |
11895371 |
ttaaaacaaactattatggagccaaggacttaactgaagcacttattccccttctccagctttcaagctcaccaaaagttgtcaatgtttcctcatccat |
11895272 |
T |
|
| Q |
413 |
gggaa |
417 |
Q |
| |
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||||| |
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| T |
11895271 |
gggaa |
11895267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 11866643 - 11866539
Alignment:
| Q |
313 |
ttaaaacaaactactatggacccaagggattaatcaaaacactttttcctcttctccaattttccagctcaccaagaattgtcaatgtttcctcaaccgt |
412 |
Q |
| |
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||||||||||||| |||||| |||||| |||| || || || |||| |||||||| |||| |||||||||| | ||||||||||||||||| || | |
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| T |
11866643 |
ttaaaacaaactattatggagccaaggacttaactgaagcatttattccccttctccagctttcaagctcaccaaaagttgtcaatgtttcctcatccat |
11866544 |
T |
|
| Q |
413 |
gggaa |
417 |
Q |
| |
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||||| |
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|
| T |
11866543 |
gggaa |
11866539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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