View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10992_low_11 (Length: 441)

Name: NF10992_low_11
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10992_low_11
NF10992_low_11
[»] chr6 (8 HSPs)
chr6 (76-441)||(33260949-33261313)
chr6 (123-429)||(33282976-33283274)
chr6 (76-429)||(33386432-33386799)
chr6 (17-200)||(33283390-33283575)
chr6 (55-200)||(33261364-33261511)
chr6 (17-186)||(33386866-33387047)
chr6 (76-132)||(33283283-33283339)
chr6 (46-78)||(33357835-33357867)
[»] scaffold0428 (4 HSPs)
scaffold0428 (123-429)||(4732-5037)
scaffold0428 (17-200)||(5153-5338)
scaffold0428 (76-132)||(5046-5102)
scaffold0428 (401-429)||(11248-11276)
[»] chr2 (4 HSPs)
chr2 (17-206)||(17441961-17442170)
chr2 (208-292)||(17442574-17442658)
chr2 (124-198)||(17442221-17442297)
chr2 (86-133)||(17442165-17442212)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 76 - 441
Target Start/End: Complemental strand, 33261313 - 33260949
Alignment:
Q  76 ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggacactgtaaattcagatgctgaaagtttagtttctgaagaagactt 175  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33261313 ttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggacatggacactgtaaattcagatgctgaaagtttagtttatgaagaagactt 33261214  T
Q  176 ggatgctgtaaacaattattgaagacctcaaatgcaccagatcctcaagaaggagaaggttcttcttttctatctcacattttttctaataatttatctc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33261213 ggatgctgtaaacaattattgaagacctcaaatgcaccagatcctcaagaaggagaaggttcttcttttctatctcacaatttttctaataatttatctc 33261114  T
Q  276 attagtattttacatatggaaatactgattgtatgtannnnnnnnctctttcgaaattacnnnnnnnnntcaatcatannnnnnngcagtaacatacatg 375  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||         |||||||||       |||||||||||||||    
T  33261113 attagtattttacatatggaaatactgattgtatgtattttttttctctttcgaaattac-aacaaaaatcaatcatatttttttgcagtaacatacatg 33261015  T
Q  376 tacatggtttttccgattaacttaccgaataatatttcctttgcatttcaaatactacctccgttc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33261014 tacatggtttttccgattaacttaccgaataatatttcctttgcatttcaagtactacctccgttc 33260949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 123 - 429
Target Start/End: Complemental strand, 33283274 - 33282976
Alignment:
Q  123 gacacggacactgtaaattcagatgctgaaagtttagtttctgaagaagacttggatgctgtaaacaattattgaagacctcaaatgcaccagatcctca 222  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||| ||||||    
T  33283274 gacacagacactgtaaactcagatgctgaaagtttagtttatgaagaagacttggatgctgtaaacaatta-------cctcaaatgcaccagctcctca 33283182  T
Q  223 agaaggagaaggttcttcttttctatctcacattttttctaataatttatctcattagtattttacatatggaaatactgattgtatgtannnnnnnnct 322  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  33283181 agaaggagaaggttcttcttttctatctcacactttttctaataatttatctcattagtattttacatatggaaatactgattgtatgtattttttttct 33283082  T
Q  323 ctttcgaaattacnnnnnnnnntcaatcatannnnnnngcagtaacatacatgtacatggtttttccgattaacttaccgaataatatttcctttgcatt 422  Q
    |||||||||||||         |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33283081 ctttcgaaattac-aacaaaaatcaatcatatttttttgcagtaacatacatgtacatggtttttccgattaacttaccgaataatatttcctttgcatt 33282983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 76 - 429
Target Start/End: Complemental strand, 33386799 - 33386432
Alignment:
Q  76 ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggaca------------cggacactgtaaattcagatgctgaaagtttagtttc 163  Q
    ||||||||||||||  |||||||||| ||||||||||||| ||||||||||            ||||||||||||||||||||||  ||||||| |||||    
T  33386799 ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggacatccgatacgacacggacactgtaaattcagatgccaaaagtttggtttc 33386700  T
Q  164 tgaagaagacttggatgctgtaaa--caattattgaagacctcaaatgcaccagatcctcaagaaggagaaggttcttcttttctatctcacattttttc 261  Q
    |||||||||||| |||||||||||  ||||||||||| ||||||| |||||||||| ||||||||||||||||||||  |||||||||||||| ||||||    
T  33386699 tgaagaagacttagatgctgtaaattcaattattgaatacctcaagtgcaccagatgctcaagaaggagaaggttctagttttctatctcacactttttc 33386600  T
Q  262 taataatttatctcattagtattttacatatggaaatactgattgtatgta-nnnnnnnnctctttcgaaattacnnnnnnnnntcaatcatannnnnnn 360  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||         |||||||||           
T  33386599 tgctaatttatctcattagtattttacatatggaaatactgattgtatgtatttttttgtttctttcgaaattac-gacaaaaatcaatcatattttttt 33386501  T
Q  361 gcagtaacatacatgtacatggtttttccgattaacttaccgaataatatttcctttgcatttcaaata 429  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386500 gcagtaacacacatatacatggtttttccgattaacttaccgaataatatttcctttgcatttcaaata 33386432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 33283575 - 33283390
Alignment:
Q  17 agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca 116  Q
    ||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  33283575 agtttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtaacacg 33283476  T
Q  117 gatacggacacggacactgtaaattcagatgctgaaagtttagtttctgaagaagacttggatgctgtaa--acaattattgaaga 200  Q
    ||||||||||||||||| ||| ||||||||||||||||||| |||||| | ||||| |  ||||||||||   |||||||||||||    
T  33283475 gatacggacacggacaccgtagattcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaaga 33283390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 33261511 - 33261364
Alignment:
Q  55 tccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggacactgtaaattcagatgctgaaag 154  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33261511 tccatatcattggtcaattcattggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggacactgtaaattcagatgctgaaag 33261412  T
Q  155 tttagtttctgaagaagacttggatgctgtaa--acaattattgaaga 200  Q
    ||| || ||| ||||||| |  ||||||||||   |||||||||||||    
T  33261411 tttggtatctaaagaagattcagatgctgtaatttcaattattgaaga 33261364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 33387047 - 33386866
Alignment:
Q  17 agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca 116  Q
    ||||||||||||||||| ||||       |||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||     
T  33387047 agtttctactgaatctcaacagaaaaaaatctcaaacctccatatcatttgtcgattcattggtcggttcctcaacaacttttgccaacaaggtagcacg 33386948  T
Q  117 gatacg------------gacacggacactgtaaattcagatgctgaaagtttagtttctgaagaagacttggatgctgtaa 186  Q
    ||||||            |||| |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||    
T  33386947 gatacgaacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaa 33386866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 33283339 - 33283283
Alignment:
Q  76 ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggaca 132  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||    
T  33283339 ttggtcggttcctcgaaaactgttgccaacaaggtagcacggatacggacacggaca 33283283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 33357867 - 33357835
Alignment:
Q  46 tctcgaacctccatatcattggtcgattcattg 78  Q
    |||||||||||||||||||||||||||||||||    
T  33357867 tctcgaacctccatatcattggtcgattcattg 33357835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 123 - 429
Target Start/End: Complemental strand, 5037 - 4732
Alignment:
Q  123 gacacggacactgtaaattcagatgctgaaagtttagtttctgaagaagacttggatgctgtaaacaattattgaagacctcaaatgcaccagatcctca 222  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5037 gacacagacactgtaaactcagatgctgaaagtttagtttttgaagaagacttggatgctgtaaacaattattgaagacctcaaatgcaccagctcctca 4938  T
Q  223 agaaggagaaggttcttcttttctatctcacattttttctaataatttatctcattagtattttacatatggaaatactgattgtatgtannnnnnnnct 322  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  4937 agaaggagaaggttcttcttttctatctcacactttttctaataatttatctcattagtattttacatatggaaatactgattgtatgtattttttttct 4838  T
Q  323 ctttcgaaattacnnnnnnnnntcaatcatannnnnnngcagtaacatacatgtacatggtttttccgattaacttaccgaataatatttcctttgcatt 422  Q
    |||||||||||||         |||||||||       ||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||    
T  4837 ctttcgaaattac-aacaaaaatcaatcatatttttttgcagtaacatacatgcacatggtttatccgaaaaacttaccgaataatatttcctttgcatt 4739  T
Q  423 tcaaata 429  Q
    |||||||    
T  4738 tcaaata 4732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 5338 - 5153
Alignment:
Q  17 agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca 116  Q
    ||||||||||||||||| ||||       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5338 agtttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcaattcattggtcggttcctcagcaactgttgccaacaaggtagcaca 5239  T
Q  117 gatacggacacggacactgtaaattcagatgctgaaagtttagtttctgaagaagacttggatgctgtaa--acaattattgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |  ||||||||||   |||||||||||||    
T  5238 gatacggacacggacactgtaaattcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaaga 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 5102 - 5046
Alignment:
Q  76 ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggaca 132  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  5102 ttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggacacggaca 5046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 429
Target Start/End: Original strand, 11248 - 11276
Alignment:
Q  401 cgaataatatttcctttgcatttcaaata 429  Q
    |||||||||||||||||||||||||||||    
T  11248 cgaataatatttcctttgcatttcaaata 11276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 17441961 - 17442170
Alignment:
Q  17 agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca 116  Q
    ||||||||||||||||| ||||       ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||     
T  17441961 agtttctactgaatctccacagaaaaaaatcttgaacctccatatcattggtcgattcattggtcagttcctcaacaactgttgccaacaaggtagcact 17442060  T
Q  117 gatac------------------ggacacggacactgtaaattcagatgctgaaagtttagtttctgaagaagacttggatgctgtaaa--caattattg 196  Q
    |||||                   |||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |||||||||||  |||||||||    
T  17442061 gatacagacatggacaccggatacgacacggacactataaattcagatgctaaaagtttggtttctgaagaagacttagatgctgtaaattcaattattg 17442160  T
Q  197 aagacctcaa 206  Q
    ||||||||||    
T  17442161 aagacctcaa 17442170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 17442574 - 17442658
Alignment:
Q  208 tgcaccagatcctcaagaaggagaaggttcttcttttctatctcacattttttctaataatttatctcattagtattttacatat 292  Q
    |||||||| || |||||||||| ||||||||| |||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  17442574 tgcaccagctcttcaagaaggaaaaggttcttgttttctatctcacactttttctgctaatttatctcattagtattttacatat 17442658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 17442221 - 17442297
Alignment:
Q  124 acacggacactgtaaattcagatgctgaaagtttagtttctgaagaagacttggatgctgtaaa--caattattgaa 198  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||  |||||||||||    
T  17442221 acacagacactgtaaattcagatgctgaaagtttggtttttgaagaggacttagatgctgtaaattcaattattgaa 17442297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 17442165 - 17442212
Alignment:
Q  86 cctcagcaactgttgccaacaaggtagcacagatacggacacggacac 133  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||    
T  17442165 cctcaacaactgttgccaacaaggtagcacggatacggacatggacac 17442212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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