View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_13 (Length: 410)
Name: NF10992_low_13
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 38544930 - 38544546
Alignment:
| Q |
11 |
atgaataataatgttatgcttcaagccttcaaccaatttcaatttagcaaaagtttctgtcatattaatccattgacaatgcctcaacttaagctcctta |
110 |
Q |
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| T |
38544930 |
atgaataataatgttatgcttcaagccttcaaccaatttcaatttagcaaaagtttctgtcatattaatccattgacaatgcctcaacttaagctcctta |
38544831 |
T |
|
| Q |
111 |
tcactcttcttcacactgtaaccataattatatgttgtgtttccactactgaatttgtctataatacaaacttcaactccacaaacatcatcctatatgg |
210 |
Q |
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| T |
38544830 |
tcactcttcttcacactgtaaccataattatatgttgtgtttccactactgaatttgtctataatacaaacttcaactccacaaacatcatcctatatgg |
38544731 |
T |
|
| Q |
211 |
aaatgccaccattcagacctctattctcactctcactaatggtagtttcttctccataggccgtgctttttaccctnnnnnnntacctatcaaaccgccc |
310 |
Q |
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| T |
38544730 |
aaatgccaccattcagacctctattctcactctcactaatggtagtttcttctccataggccgtgctttttaccctaaaaaaatacctatcaaaccaccc |
38544631 |
T |
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| Q |
311 |
aactcttccaccattctcccctttgcaacctccttcattttctctgttgcccccatcaaaaactctattgcaggacatgccttct |
395 |
Q |
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| T |
38544630 |
aactcttccaccattctcccctttgcaacctccttcattttctctgttgcccccatcaaaaactctattgcaggacatgccttct |
38544546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 87 - 389
Target Start/End: Original strand, 38351965 - 38352270
Alignment:
| Q |
87 |
caatgcctcaacttaagctccttatcactcttcttcacactgtaaccataattatatgttgtgtttccactactgaatttgtctataatacaaacttcaa |
186 |
Q |
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| T |
38351965 |
caatgcctcaacttaagctacttttcactcttctttacactttaaccattttga---gttatgtttccactactgaatttgtctataatacaaacttcaa |
38352061 |
T |
|
| Q |
187 |
ctccacaaacatcatcctatatggaaatgccaccattcagacctctattctcactctcactaatg------gtagtttcttctccataggccgtgctttt |
280 |
Q |
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||||| |||||| ||||||||||||||||| |||||| | | || ||||||||||| ||||||| || || |||||| |||| ||||||||| |
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| T |
38352062 |
ctccaaaaacattatcctatatggaaatgcaaccattaacaaatccattctcactctgactaatgacacttctacttccttctcaatagctcgtgctttt |
38352161 |
T |
|
| Q |
281 |
taccctnnnnnnntacctatcaaaccgcccaactcttccaccattctcccctttgcaacctccttcattttctctgttgcccccatcaaaaactctattg |
380 |
Q |
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|||||| |||||| ||||| | ||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||||||| ||| |
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| T |
38352162 |
taccctaaaaaaatacctacaaaaccatcaaactcttccactcttctcccatttgctacttccttcattttctctgtctcccccatcaaaaactttatca |
38352261 |
T |
|
| Q |
381 |
caggacatg |
389 |
Q |
| |
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||||||||| |
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| T |
38352262 |
caggacatg |
38352270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 38548492 - 38548404
Alignment:
| Q |
158 |
actgaatttgtctataatacaaacttcaactccacaaacatcatcctatatggaaatgccaccattcagacctctattctcactctcac |
246 |
Q |
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||||||||||| ||||| | |||||||||||| |||||||| | ||| |||||||||| || ||||| | || || ||||||||||| |
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| T |
38548492 |
actgaatttgtttataacagaaacttcaactcaacaaacataaaccttaatggaaatgcaacaattcaaaattcaatcctcactctcac |
38548404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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