View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_14 (Length: 392)
Name: NF10992_low_14
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 49825713 - 49825515
Alignment:
| Q |
11 |
cacagatttaaggttaattttatatacaaaactaaaagttgtatctatcataccaactccacatgcttcttcaaatttattcacatccaggttttccgaa |
110 |
Q |
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| T |
49825713 |
cacagatttaaggttaattttatatacaaaactaaaagttgtatctatcataccaactccacatgcttcttcaaatttattcacatccaggttttccgaa |
49825614 |
T |
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| Q |
111 |
cccgtattggcaagaaatgatagtgctgcatctaactgagccgttgttttcacctgcaatgataacccatccatgtgagaaagagaataactccaaggt |
209 |
Q |
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| T |
49825613 |
cccgtattggcaagaaatgatagtgctgcatctaactgagccgttgttttcacctgcaatgataacccatccatgtgagaaagagaataactccaaggt |
49825515 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 49825419 - 49825351
Alignment:
| Q |
306 |
caagtacatgccaatcctatatcatacgaatacaacaaaaccaacaatatatggttcacaccttggatg |
374 |
Q |
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| T |
49825419 |
caagtacatgccaatcctatatcatacgaatacaacaaaaccaacaatatatggttcacaccttggatg |
49825351 |
T |
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