View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_16 (Length: 353)
Name: NF10992_low_16
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 34790231 - 34790573
Alignment:
| Q |
1 |
cttgaaggtatggatgagctatgcagagtttgaagcaacagctatagatgagagtttagacttatcggaacaggaacaaaaggagcgatgccttgttcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790231 |
cttgaaggtatggatgagctatgcagagtttgaagcaacagctatagatgagagtttagacttatcggaacaggaacaaaaggagcgatgccttgttcgt |
34790330 |
T |
|
| Q |
101 |
gcgagaagtatgtgatcacagctttaagcgcatgctatataaatcatgattgtatgttttgtttg-------aatgcaacataataattttatgattctc |
193 |
Q |
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| T |
34790331 |
gcgagaagtatgtgatcacagctttaagcgcatgctatataaatcatgattgtatattttgtttgaactttgaatgcaacataataattttatgattctc |
34790430 |
T |
|
| Q |
194 |
atcatattttgttttgtgcttgtttatagaggtgtttgaggatgctctaaaccacttcagatcatcagctccaattttaaaagaagaaagggcaatgcta |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790431 |
atcatattttgttttgtgcttgtttatagaggtgtttgaggatgctctaaaccacttcagatcatcagctccaattttaaaagaagaaagggcaatgcta |
34790530 |
T |
|
| Q |
294 |
ttggagaaatggctcaacttggaggcttcatctggggagctag |
336 |
Q |
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| T |
34790531 |
ttggagaaatggctcaacttggaggcttcatctggggagctag |
34790573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2288532 - 2288200
Alignment:
| Q |
1 |
cttgaaggtatggatgagctatgcagagtttgaagcaacagctatagatgagagtttagacttatcggaacaggaacaaaaggagcgatgccttgttcgt |
100 |
Q |
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| T |
2288532 |
cttgaaggtatggcagagctatgcagagtttgaagcaacagctatagatgagagtttagaattatcggaacaagaacaaaaggagcagtgccttcagcgt |
2288433 |
T |
|
| Q |
101 |
gcgagaagtatgtgatcacagctttaagcgcatgctatataaatcatgattgtatgttttgtttgaa-tgcaacataataattttatgattctcatcata |
199 |
Q |
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|||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||| |
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| T |
2288432 |
gcgagaagtatgtgatcacagctttatgctcacgctata--aatcatgattgtatgttttgtttgaactgcaacgtaataattttctgattctcttcata |
2288335 |
T |
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| Q |
200 |
ttttgttttgtgcttgtttatagaggtgtttgaggatgctctaaaccacttcagatcatcagctccaattttaaaagaagaaagggcaatgctattggag |
299 |
Q |
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| T |
2288334 |
ttttgttttgggcctgttta--gaggtgtttgaggatgctctaaaccacttcagatcatcagctccggatttaaaagaagaaagggcaatgctattagag |
2288237 |
T |
|
| Q |
300 |
aaatggctcaacttggaggcttcatctggggagctag |
336 |
Q |
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| T |
2288236 |
aaatggctcaacttggaggcttcatctggggagctag |
2288200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 49275741 - 49275667
Alignment:
| Q |
254 |
atcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttcatctgg |
328 |
Q |
| |
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| T |
49275741 |
atcatcagctccagattcaagagaagaaagggcgatgcttttggtgaaatggcttaacttggaggcttcatctgg |
49275667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 49279307 - 49279240
Alignment:
| Q |
254 |
atcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggctt |
321 |
Q |
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| T |
49279307 |
atcatcagctccagattcaagagaagaaagggcgatgcttttggtgaaatggctcaacttggaggctt |
49279240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 49275859 - 49275824
Alignment:
| Q |
9 |
tatggatgagctatgcagagtttgaagcaacagcta |
44 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
49275859 |
tatggataagctatgcagagtttgaagcaacagcta |
49275824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 49279425 - 49279390
Alignment:
| Q |
9 |
tatggatgagctatgcagagtttgaagcaacagcta |
44 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
49279425 |
tatggataagctatgcagagtttgaagcaacagcta |
49279390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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