View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_24 (Length: 274)
Name: NF10992_low_24
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 83 - 265
Target Start/End: Complemental strand, 8152474 - 8152295
Alignment:
| Q |
83 |
ccagccaaagacacaaacaaaataggaaatgcaactataatttaatgacaacatctattttaaactgaaattctgctgctaccaaagttctagaaggatt |
182 |
Q |
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| T |
8152474 |
ccagccaaagacacaaacaaaataggaaatgcaactataatttaat---aacatctattttaaactgaaattctgctgctaccaaagttctagaaggatt |
8152378 |
T |
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| Q |
183 |
ggtctaatgattattctatgtaagacatgatatgcggtgttaatcgcatcggtctacaagtgtttaggaaggttcatctcact |
265 |
Q |
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| T |
8152377 |
ggtctaatgattattctatgtaagacatgatatgcggtgttaatcgcatcggtctaaaagtgtttaggaaggttcatttcact |
8152295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 8152558 - 8152501
Alignment:
| Q |
22 |
ataaaaaatgatataaattttcacagcgtatagagaataattaatagtatgaatcaac |
79 |
Q |
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| T |
8152558 |
ataaaaaatgatataaattttcacaacgtatagagaataattaatagtatgaatcaac |
8152501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39615158 - 39615202
Alignment:
| Q |
20 |
aaataaaaaatgatataaattttcacagcgtatagagaataatta |
64 |
Q |
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| T |
39615158 |
aaataaaaatagatataaatttacacaacgtatagagaataatta |
39615202 |
T |
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