View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_26 (Length: 269)
Name: NF10992_low_26
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 11581973 - 11582182
Alignment:
| Q |
16 |
ttaaatcataaatcatcaattcaatgtaatgcattaaatcacatgttatgaaccaaaaattatataaactaaaccctataagaaaaaatatgtaggtatt |
115 |
Q |
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| T |
11581973 |
ttaaatcacaaatcatcaattcaatgtaatgcat-aaatgacatgttatgaaccaaaaatcatataaactaaaccctataagaaaaaatatgtaggtatt |
11582071 |
T |
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| Q |
116 |
tttacatctaagattgtaccttatgacgaacatccaatgcaaggccagttactggttcagaattttgactgtcaattttgatcaaacgcttcaatatttg |
215 |
Q |
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| T |
11582072 |
tttacatctaagattgtaccttacgacgaacatccaatgcaaggccagttactggttcagaattttgactgtcaattttgatcaaacgcttcaatatttg |
11582171 |
T |
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| Q |
216 |
tatttggtcaa |
226 |
Q |
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| T |
11582172 |
tatttggtcaa |
11582182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 11588291 - 11588500
Alignment:
| Q |
16 |
ttaaatcataaatcatcaattcaatgtaatgcattaaatcacatgttatgaaccaaaaattatataaactaaaccctataagaaaaaatatgtaggtatt |
115 |
Q |
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||||||||||||||||||||| ||| ||||| |||||| | |||| ||||||||||||| ||| | ||||| | |||| || ||||| ||| || | |
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| T |
11588291 |
ttaaatcataaatcatcaattaaatataatgagttaaatgaaatgtcatgaaccaaaaatcatagagcctaaaac-tatatgataaaattcgtaaataat |
11588389 |
T |
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| Q |
116 |
tttacatctaagattgtaccttatgacgaacatccaatgcaaggccagttactggttcagaattttgactgtcaattttgatcaaacgcttcaatatttg |
215 |
Q |
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| T |
11588390 |
tttacatctaacattgtacctttggatgaacatcccttgcaaggcgacttcttggtttagaattttgattgtcaattttgatcaaatgcttcaatatttg |
11588489 |
T |
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| Q |
216 |
tatttggtcaa |
226 |
Q |
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| T |
11588490 |
tctttggtcaa |
11588500 |
T |
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