View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_27 (Length: 268)
Name: NF10992_low_27
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_27 |
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| [»] scaffold0428 (3 HSPs) |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: scaffold0428 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 5338 - 5087
Alignment:
| Q |
17 |
agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca |
116 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5338 |
agtttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcaattcattggtcggttcctcagcaactgttgccaacaaggtagcaca |
5239 |
T |
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| Q |
117 |
gatacggacacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttcaattattgaagaagctattcagacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5238 |
gatacggacacggacactgtaaattcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaagaagctattcagacag |
5139 |
T |
|
| Q |
217 |
atattgcaacatgcaatgtcgaaactgactcaccagttggtcggttcctcga |
268 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5138 |
atattgcaacatgcaatgtcgaaactgacttaccagttggtcggttcctcga |
5087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 5102 - 5046
Alignment:
| Q |
76 |
ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggaca |
132 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
5102 |
ttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggacacggaca |
5046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 5037 - 4960
Alignment:
| Q |
123 |
gacacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttcaattattgaaga |
202 |
Q |
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||||| ||||||||||| ||||||||||||||||| |||| ||||||||| | |||||||||| ||||||||||||| |
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| T |
5037 |
gacacagacactgtaaactcagatgctgaaagtttagtttttgaagaagacttggatgctgtaa--acaattattgaaga |
4960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 55 - 268
Target Start/End: Complemental strand, 33261511 - 33261298
Alignment:
| Q |
55 |
tccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggacactgtaaattcagatgctgaaag |
154 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33261511 |
tccatatcattggtcaattcattggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggacactgtaaattcagatgctgaaag |
33261412 |
T |
|
| Q |
155 |
tttggtttctgaagaagattcagatgctgtaatttcaattattgaagaagctattcagacagatattgcaacatgcaatgtcgaaactgactcaccagtt |
254 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33261411 |
tttggtatctaaagaagattcagatgctgtaatttcaattattgaagaagctattcagacagatattgcaacatgcaatgtcgaaactgactcaccagtt |
33261312 |
T |
|
| Q |
255 |
ggtcggttcctcga |
268 |
Q |
| |
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|||||||||||||| |
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| T |
33261311 |
ggtcggttcctcga |
33261298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 33283575 - 33283324
Alignment:
| Q |
17 |
agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca |
116 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33283575 |
agtttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtaacacg |
33283476 |
T |
|
| Q |
117 |
gatacggacacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttcaattattgaagaagctattcagacag |
216 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33283475 |
gatacggacacggacaccgtagattcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaagaagctattcagacag |
33283376 |
T |
|
| Q |
217 |
atattgcaacatgcaatgtcgaaactgactcaccagttggtcggttcctcga |
268 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33283375 |
atattgcaacatgcaatgtcgaaactgacttaccagttggtcggttcctcga |
33283324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 33387047 - 33386784
Alignment:
| Q |
17 |
agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca |
116 |
Q |
| |
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||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
33387047 |
agtttctactgaatctcaacagaaaaaaatctcaaacctccatatcatttgtcgattcattggtcggttcctcaacaacttttgccaacaaggtagcacg |
33386948 |
T |
|
| Q |
117 |
gatacg------------gacacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttcaattattgaagaag |
204 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33386947 |
gatacgaacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttaaattattgaagaac |
33386848 |
T |
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| Q |
205 |
ctattcagacagatattgcaacatgcaatgtcgaaactgactcaccagttggtcggttcctcga |
268 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
33386847 |
ctattcagacagatattgcaacaagcaatgtcgaaaatgactcactggttggtcggttcctcga |
33386784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 33261313 - 33261189
Alignment:
| Q |
76 |
ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattc |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| | |
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| T |
33261313 |
ttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggacatggacactgtaaattcagatgctgaaagtttagtttatgaagaagactt |
33261214 |
T |
|
| Q |
176 |
agatgctgtaatttcaattattgaaga |
202 |
Q |
| |
|
|||||||||| ||||||||||||| |
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| T |
33261213 |
ggatgctgtaa--acaattattgaaga |
33261189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 33417516 - 33417407
Alignment:
| Q |
146 |
tgctgaaagtttggtttctgaagaagattcagatgctgtaatttcaattattgaagaagctattcagacagatattgcaacatgcaatgtcgaaactgac |
245 |
Q |
| |
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|||||||||| ||| ||| |||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
33417516 |
tgctgaaagtctggcttcagaagaagatttagatgctgtaaattcaattatcgaggaagctattcagacagatattgcaacaagcaacgtcgaaactgat |
33417417 |
T |
|
| Q |
246 |
tcaccagttg |
255 |
Q |
| |
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||||| |||| |
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| T |
33417416 |
tcaccggttg |
33417407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 33386799 - 33386663
Alignment:
| Q |
76 |
ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggaca------------cggacactgtaaattcagatgctgaaagtttggtttc |
163 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
33386799 |
ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggacatccgatacgacacggacactgtaaattcagatgccaaaagtttggtttc |
33386700 |
T |
|
| Q |
164 |
tgaagaagattcagatgctgtaatttcaattattgaa |
200 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||| |
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| T |
33386699 |
tgaagaagacttagatgctgtaaattcaattattgaa |
33386663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 33283339 - 33283283
Alignment:
| Q |
76 |
ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggaca |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
33283339 |
ttggtcggttcctcgaaaactgttgccaacaaggtagcacggatacggacacggaca |
33283283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 33283274 - 33283211
Alignment:
| Q |
123 |
gacacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaa |
186 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||| ||||||||| | |||||||||| |
|
|
| T |
33283274 |
gacacagacactgtaaactcagatgctgaaagtttagtttatgaagaagacttggatgctgtaa |
33283211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 33357867 - 33357835
Alignment:
| Q |
46 |
tctcgaacctccatatcattggtcgattcattg |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
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| T |
33357867 |
tctcgaacctccatatcattggtcgattcattg |
33357835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 124 - 255
Target Start/End: Original strand, 17442221 - 17442352
Alignment:
| Q |
124 |
acacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttcaattattgaagaagctattcagacagatattgc |
223 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||| || | ||||||||||| ||||||||||||| | ||||||||||||||||||| |
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| T |
17442221 |
acacagacactgtaaattcagatgctgaaagtttggtttttgaagaggacttagatgctgtaaattcaattattgaaaagactattcagacagatattgc |
17442320 |
T |
|
| Q |
224 |
aacatgcaatgtcgaaactgactcaccagttg |
255 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |
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| T |
17442321 |
aacaagcaatgtcgaaactgactcaccggttg |
17442352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 17441961 - 17442164
Alignment:
| Q |
17 |
agtttctactgaatctctacagnnnnnnntctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtagcaca |
116 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
17441961 |
agtttctactgaatctccacagaaaaaaatcttgaacctccatatcattggtcgattcattggtcagttcctcaacaactgttgccaacaaggtagcact |
17442060 |
T |
|
| Q |
117 |
gatac------------------ggacacggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttcaattattg |
198 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
17442061 |
gatacagacatggacaccggatacgacacggacactataaattcagatgctaaaagtttggtttctgaagaagacttagatgctgtaaattcaattattg |
17442160 |
T |
|
| Q |
199 |
aaga |
202 |
Q |
| |
|
|||| |
|
|
| T |
17442161 |
aaga |
17442164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 17442165 - 17442205
Alignment:
| Q |
86 |
cctcagcaactgttgccaacaaggtagcacagatacggaca |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
17442165 |
cctcaacaactgttgccaacaaggtagcacggatacggaca |
17442205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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