View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_3 (Length: 634)
Name: NF10992_low_3
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Complemental strand, 33806979 - 33806363
Alignment:
| Q |
18 |
ttaacaacttggtgaatattaccaaagccatctttgttctagtttctaaggtttattttgcgcatctggagattttaggatagaatgaacatgggacaac |
117 |
Q |
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| T |
33806979 |
ttaacaacttggtgaatattaccaaagacatctttgttccagtttctaaggtttattttgagcatctggagcttttaggatagaatgaacatgggacaac |
33806880 |
T |
|
| Q |
118 |
caactacattaaaattccaggttgaggttacaatgtttctatagtctgtatgcagggtccacatttattgaaatttaaactaggtaacaaacttgttttg |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806879 |
caactacattaaaattctaggttgaggttacaatgtttctatagtctgtatgtagggtccacatttattgaaatttaaactaggtaacaaacttgttttg |
33806780 |
T |
|
| Q |
218 |
agtggcttcaaaatcaagcaaaaatgggtgatagtctgagttagttcttaatagggttgaacaggttacacaggtacacatttcaagccaaaggtgtttg |
317 |
Q |
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|||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806779 |
agtggcttcaaaatcaaggaaaattgggtgatggtctaagttagttcttaatagggttgaacaggttacacaggtacacatttcaagccaaaggtgtttg |
33806680 |
T |
|
| Q |
318 |
caaatgaatctgtccagtcttctttcagtgtatcttcttccacttctaccattttgccaagcgaatgttgcacctttggtggtaaggtgtatcaggttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33806679 |
caaatgaatctgtccagtcttctttcagtgtatcttcttccacttctaccattttgccaagcgaatgttgcacctttggtgggaaggtgtatcaggttat |
33806580 |
T |
|
| Q |
418 |
ttctattagtccacaattgaaagcccttcattgcagttctagaaggtcaataataccccttgtgctcataagctcctaagatggagttgaaatctcccct |
517 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
33806579 |
ttctattagtccacaattgaaagtccttcattgcagttctggaaggtcaataatgccccttgtgcttataagctcctaagatggagttgaaatctcccat |
33806480 |
T |
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| Q |
518 |
aaagcaccagggaatggggtggttcgtttgtaaagattgcagggactgccacagttctcttctcttcaaatagcatgttgaggcatatacatcagaaatt |
617 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33806479 |
aaagcaccagggaatggggtagttcgtttgtaaagattgcagggactgccacagttctcttctcttcaaataacatgttgaggcatatacatcagaaatt |
33806380 |
T |
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| Q |
618 |
ccccaggtaatattgtt |
634 |
Q |
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|| |||||||||||||| |
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| T |
33806379 |
ccacaggtaatattgtt |
33806363 |
T |
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