View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_4 (Length: 607)
Name: NF10992_low_4
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 30552104 - 30551536
Alignment:
| Q |
1 |
caatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattatcacaacatgtttttgttatactaaactattttcgtttatg |
100 |
Q |
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| T |
30552104 |
caatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattat-------------------acaaaactattttcgtttatg |
30552024 |
T |
|
| Q |
101 |
tatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttcc |
200 |
Q |
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| T |
30552023 |
tatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttcc |
30551924 |
T |
|
| Q |
201 |
cttctatcctttttatcttcatcaagaacaatcacaacagaagcattacaaattgacgacgaatgacacagaacgatgtcttgttcaagatcaccctcat |
300 |
Q |
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| T |
30551923 |
attctatcctttttatcttcatcaagaacaatcacaacagaagcattacaaattgacgacgaatgacatagaacaatgtcttgttcaagatcaccctcat |
30551824 |
T |
|
| Q |
301 |
aagcgaaatctgttaagcatcgactataaaccttgatggcatatttacatgatttatttgaatgatggttccatattgctattgaaaacttctcaagtac |
400 |
Q |
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| T |
30551823 |
aagcgaaatctgttaagcgtcgactataaaccttgatggcatatttacttgatttatttgaatgatggttccatattgctattgaaaacttctcaagtac |
30551724 |
T |
|
| Q |
401 |
aggtacttgtaaactaatgttttgtgttgttggccattcacaccctctagcttcaaacactttgagaatcgggaaattgagagttatatctttcgaacaa |
500 |
Q |
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| T |
30551723 |
aggtacttgtaaactaatgttttgtgttgttggccattcacaccctctagcttcaaacactttgagaatcgggaaattgagagttatatctttcgaacaa |
30551624 |
T |
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| Q |
501 |
gtgggcgaatcactcactaatttaaccccagaaaagctaagtttttgaaggttttggaggcaaacagatatgggaagactaagagtac |
588 |
Q |
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| T |
30551623 |
gtgggcgaatcactcactaatttaaccccagaaaagctaagtttttgaaggttttggaggcaaacagatatgggaagactaagagtac |
30551536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 106 - 534
Target Start/End: Complemental strand, 30560686 - 30560258
Alignment:
| Q |
106 |
taaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttcccttct |
205 |
Q |
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| T |
30560686 |
taaaagaaaagcataccttgtaaaacaataatttcagtcgttccacttcatcgatttgtcttaaaagattatatgcttgaaaaccaagttcttccattct |
30560587 |
T |
|
| Q |
206 |
atcctttttatcttcatcaagaacaatcacaacagaagcattacaaattgacgacgaatgacacagaacgatgtcttgttcaagatcaccctcataagcg |
305 |
Q |
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| T |
30560586 |
gttctttttatcttcatcaacaacaatcacaacagaagcaatacgaacagacgatgaatcacacagaacaatatcctgttcaagatcaccctcataagag |
30560487 |
T |
|
| Q |
306 |
aaatctgttaagcatcgactataaaccttgatggcatatttacatgatttatttgaatgatggttccatattgctattgaaaacttctcaagtacaggta |
405 |
Q |
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| T |
30560486 |
aaatccgttaggtgtggactataaactttgatggcaaatttaaacgctttatttgaatgacggttccatattgctatggaaaacttctcaagtaaaggta |
30560387 |
T |
|
| Q |
406 |
cttgtaaactaatgttttgtgttgttggccattcacaccctctagcttcaaacactttgagaatcgggaaattgagagttatatctttcgaacaagtggg |
505 |
Q |
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|||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||| |||||| | ||| |||||||||| ||| || || |
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| T |
30560386 |
cttgtaaactaatgttctgtgttgttgaccatttgcaccctctggcttcaaacactttgagaattgggaaactaagatttatatcttttgaataatcgga |
30560287 |
T |
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| Q |
506 |
cgaatcactcactaatttaaccccagaaa |
534 |
Q |
| |
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|||||||||| || |||| |||||||| |
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| T |
30560286 |
agaatcactcaacaacttaatcccagaaa |
30560258 |
T |
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