View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10992_low_7 (Length: 593)
Name: NF10992_low_7
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 3 - 580
Target Start/End: Original strand, 22900555 - 22901129
Alignment:
| Q |
3 |
tggtcgagtgagaagaaagaaaattgacacttaggccaacatatgttcttgtgtatgtgtgggtaggagggtagcatgcatgtttgaacttgactgaggt |
102 |
Q |
| |
|
||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22900555 |
tggtcgactcagaaaaaagaaaattgacacttaggccaacatatgttcttgtgtatgtgtgggtaggagggtaacatgcatgtttgaacttgactgaggt |
22900654 |
T |
|
| Q |
103 |
ctccccgagtgactggatcctcttcaaggttgccacactcgacgaagtttggcaattcataaagtgtctcnnnnnnnnnnnnnncttctttttctgaatg |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22900655 |
ctccccgagtgactgtatcctcttcaaggttgccacactcgacgaagtttggcaattcataaagtgtctcttttttttttt---cttctttttctgaatg |
22900751 |
T |
|
| Q |
203 |
gacaatattagtacggtaattgttgtgctaattttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttg |
302 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22900752 |
gacaatattagtacggtaattgttatgctaattttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttg |
22900851 |
T |
|
| Q |
303 |
agctaccctatcttgaagggatatacatttcagcaccacctctattgtagacattaaaactcacacgctataattcataaaattgattagttcattttta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22900852 |
agctaccctatcttgaagggatatacatttcaacaccacctctattgtagacattaaaactcacacgctataattcataaaattgattagttcatttttt |
22900951 |
T |
|
| Q |
403 |
aaactcatcatcatgccatcttcaatcagtatcaaagtaccttagcagtctcatcatcttataggtaggaactataacaaaaagtacgagtgttaattgt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22900952 |
aaactcatcatcatgccatcttcaatcagtatcaaagtaccttagcagtctcatcatcttataggtaggaactataacaaaaagtacgagtgttaattgt |
22901051 |
T |
|
| Q |
503 |
gacaataagcgatttttggatagtttcttgaactacaagctattgttagaaagtacagatgattaactacttgttagt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22901052 |
gacaataagcgatttttggatagtttcttgaactacaagctattgttagaaagtacagatgattaactacttgttagt |
22901129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Original strand, 22882635 - 22883199
Alignment:
| Q |
18 |
aaagaaaattgacacttaggccaacatatgttcttgtgtatgtgtgggtaggagggtagcatgcatgtttgaacttgactgaggtctccccgagtgactg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22882635 |
aaagaaaattgacacttaggccaacatatgttcttgtgtatgtgtgggtaggagggtaacatgcatgtttgaacttgactgaggtctccccgagtgactg |
22882734 |
T |
|
| Q |
118 |
gatcctcttcaaggttgccacactcgacgaagtttggcaattcataaagtgtctcnnnnnnnnnnnnnncttctttttctgaatggacaatattagtacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22882735 |
tatcctcttcaaggttgccacactcgacgaagtttggcaattcataaagtgtctctttttttttttt--cttctttttctgaatggacaatattagtacg |
22882832 |
T |
|
| Q |
218 |
gtaattgttgtgctaattttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttgagctaccctatcttg |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22882833 |
gtaattgttatgctaattttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttgagctaccctatcttg |
22882932 |
T |
|
| Q |
318 |
aagggatatacatttcagcaccacctctattgtagacattaaaactcacacgctataattcataaaattgattagttcatttttaaaactcatcatcatg |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22882933 |
aagggatatacatttcaacaccacctctattgtagacattaaaactcacacgctataattcataaaattgattagttcattttttaaactcatcatcatg |
22883032 |
T |
|
| Q |
418 |
ccatcttcaatcagtatcaaagtaccttagcagtctcatcatcttataggtaggaac----tataacaaaaagtacgagtgttaattgtgacaataagcg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22883033 |
ccatcttcaatcagtatcaaagtaccttagcagtctcatcatcttataggtaggaactatatataacaaaaagtacgagtgttaattgtgacaataagcg |
22883132 |
T |
|
| Q |
514 |
atttttggatagtttcttgaactacaagctattgttagaaagtacagatgattaactacttgttagt |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22883133 |
atttttggatagtttcttgaactacaagctattgttagaaagtacagatgattaactacttgttagt |
22883199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 234 - 489
Target Start/End: Complemental strand, 22983965 - 22983712
Alignment:
| Q |
234 |
ttttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttgagctaccctatcttgaagggatatacatttc |
333 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22983965 |
ttttttctccattctaggacttgaaccctgaacctctaacttctta--atctttagctcaaaccagttgagctaccctatcttgaagggatatacatttc |
22983868 |
T |
|
| Q |
334 |
agcaccacctctattgtagacattaaaactcacacgctataattcataaaattgattagttcatttttaaaactcatcatcatgccatcttcaatcagta |
433 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22983867 |
aacaccacctctattgtagacattaaaactcacacgctataattcataaaattgattagttcattttttaaactcatcatcatgccatcttcaatcagta |
22983768 |
T |
|
| Q |
434 |
tcaaagtaccttagcagtctcatcatcttataggtaggaactataacaaaaagtac |
489 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
22983767 |
tcaaagtaccttagcagtctcatcatcttttaggtaagaactataacaaaaagtac |
22983712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 22915553 - 22915887
Alignment:
| Q |
15 |
aagaaagaaaattgacacttaggccaacatatgttcttgtgtatgtgtgggtaggagggtagcatgcatgtttgaacttgactgaggtctccccgagtga |
114 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
22915553 |
aagaaggaaaattgacacttagaccaacatatgttctagtgtctgtgtgggtaggagggtagcatgcatgttcgaacttgactgagatctccccgagtga |
22915652 |
T |
|
| Q |
115 |
ctggatcctcttcaaggttgccacactc----gacgaagtttggcaattcataaagtgtctcnnnnnnnnnnnnnncttctttttctgaatggacaatat |
210 |
Q |
| |
|
|||||||||||||| | |||||||| | ||||||||||||||||||||||||| ||| ||||||||| ||| ||||| |
|
|
| T |
22915653 |
ctggatcctcttcagtgatgccacacgcttaagacgaagtttggcaattcataaagt------------------tctttattttctgaaaggaaaatat |
22915734 |
T |
|
| Q |
211 |
tagtacggtaattgttgtgctaattttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttgagctaccc |
310 |
Q |
| |
|
| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||| || |
|
|
| T |
22915735 |
tggtacgttaattcttatgctagttttttctcctttctaggacttgaaccctaatcctctaactcct--taacctttagctcaaaccaaatgagctatcc |
22915832 |
T |
|
| Q |
311 |
tatcttgaagggatatacatttcagcaccacctctattgtagacattaaaactca |
365 |
Q |
| |
|
|||| | ||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
22915833 |
tatcctaaagggatatacatttcaacaccaccgctattgtagacattaaaactca |
22915887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 234 - 489
Target Start/End: Original strand, 23804452 - 23804697
Alignment:
| Q |
234 |
ttttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttgagctaccctatcttgaagggatatacatttc |
333 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| |||| | |||| |||||||||||||||||||| ||| | | ||||||||||||| |
|
|
| T |
23804452 |
ttttttctccattctaggacttgaaccctgaacctctaacttctta--atctttagctcaaaccagttgagctacctcatcctataaggatatacatttc |
23804549 |
T |
|
| Q |
334 |
agcaccacctctattgtagacattaaaactcacacgctataattcataaaattgattagttcatttttaaaactcatcatcatgccatcttcaatcagta |
433 |
Q |
| |
|
| || ||| |||| ||||||||||||||||| || ||||| ||||||||||||||| |||||| ||||||||||||| ||||||| |||| | |
|
|
| T |
23804550 |
aacatcacatctacggtagacattaaaactcatacc--ataatgcataaaattgattagatcatttctaaaactcatcattatgccattttca------a |
23804641 |
T |
|
| Q |
434 |
tcaaagtaccttagcagtctcatcatcttataggtaggaactataacaaaaagtac |
489 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23804642 |
tcacagtaccttagcagtctcatcatcttttaggtaagaactataacaaaaagtac |
23804697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 400 - 574
Target Start/End: Original strand, 22915878 - 22916048
Alignment:
| Q |
400 |
ttaaaactcatcatcatgccatcttcaatcagtatcaaagtaccttagcagtctcatcatcttataggtaggaactata--acaaaaagtacgagtgtta |
497 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||||||| |
|
|
| T |
22915878 |
ttaaaactcatcatcatgctatcttcaatcgc------agtaccttagcagtatcatcatcttataggtaagaactatataacaaaaactactagtgtta |
22915971 |
T |
|
| Q |
498 |
attgtgacaataagcgatttttggatagtttcttgaactacaagctattgttagaaagtacagatgattaactactt |
574 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
22915972 |
attgtgagaataagtgatttttggatagtttcttgaactacaagctattgttagaaagtacagctggttaactactt |
22916048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 22984144 - 22984038
Alignment:
| Q |
34 |
taggccaacatatgttcttgtgtatgtgtgggtaggagggtagcatgcatgtttgaacttgactgaggtctccccgagtgactggatcctcttcaaggtt |
133 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22984144 |
taggccaacatatgttctagtgtattggtccgtaggagggtagcatgcatgtgtgaacttgactgaggtctccccgagtgactgtatcctcttcaaggtt |
22984045 |
T |
|
| Q |
134 |
gccacac |
140 |
Q |
| |
|
||||||| |
|
|
| T |
22984044 |
gccacac |
22984038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 23804274 - 23804380
Alignment:
| Q |
34 |
taggccaacatatgttcttgtgtatgtgtgggtaggagggtagcatgcatgtttgaacttgactgaggtctccccgagtgactggatcctcttcaaggtt |
133 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
23804274 |
taggccaacatatgttctagtgtattggtccgtaggagggtagcatgcatgtgtgaacttgactgaggtctccccggataactggatcctcttcaaggtt |
23804373 |
T |
|
| Q |
134 |
gccacac |
140 |
Q |
| |
|
||||||| |
|
|
| T |
23804374 |
gccacac |
23804380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 479 - 580
Target Start/End: Complemental strand, 22983590 - 22983489
Alignment:
| Q |
479 |
acaaaaagtacgagtgttaattgtgacaataagcgatttttggatagtttcttgaactacaagctattgttagaaagtacagatgattaactacttgtta |
578 |
Q |
| |
|
||||||||||| |||||||||| || |||||| |||||||| ||||||||||| ||| || |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
22983590 |
acaaaaagtactggtgttaattgcgagaataagtgatttttgtatagtttcttgtactgcaggctattgttagaaagtacagctggttaactacttgtta |
22983491 |
T |
|
| Q |
579 |
gt |
580 |
Q |
| |
|
|| |
|
|
| T |
22983490 |
gt |
22983489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 479 - 580
Target Start/End: Original strand, 23804818 - 23804919
Alignment:
| Q |
479 |
acaaaaagtacgagtgttaattgtgacaataagcgatttttggatagtttcttgaactacaagctattgttagaaagtacagatgattaactacttgtta |
578 |
Q |
| |
|
||||||||||| |||||||||| || |||||| |||||||| ||||||||||| ||| || |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
23804818 |
acaaaaagtactggtgttaattgcgagaataagtgatttttgtatagtttcttgtactgcaggctattgttagaaagtacagctggttaactacttgtta |
23804917 |
T |
|
| Q |
579 |
gt |
580 |
Q |
| |
|
|| |
|
|
| T |
23804918 |
gt |
23804919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 8375142 - 8375190
Alignment:
| Q |
21 |
gaaaattgacacttaggccaacatatgttcttgtgtatgtgtgggtagg |
69 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
8375142 |
gaaaatcgacacttaggccaacatatgttcgggtgtacgagtgggtagg |
8375190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 29728781 - 29728855
Alignment:
| Q |
234 |
ttttttctcctttctaggacttgaaccctaaacctctaactccttataacctttttctcaaaccagttgagctaccc |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||| ||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
29728781 |
ttttttctccttaataggacttgaaccctgaatctccaactcct--taacccttagctcaaaccagttgagctaccc |
29728855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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