View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10992_low_9 (Length: 515)
Name: NF10992_low_9
Description: NF10992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10992_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 246 - 497
Target Start/End: Complemental strand, 5808742 - 5808505
Alignment:
| Q |
246 |
cccaattgtatggcagacatcttgtaagtgaaactatgttgtgccctttgttttcggtggtgtcgataatttaaaaattaaattgcaaatagttgacaaa |
345 |
Q |
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| T |
5808742 |
cccaattgtatggcagacatcttgtaagtgaaactatgctgtgccctttgttttaggtggtgtcgataatttaaaaattaaattgcaaatagttgacaaa |
5808643 |
T |
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| Q |
346 |
cttattattcttcaggtgatagagagagcgaaagaaggtgatcgaagtttggaggaactacaggctcggactgcgctgctcaatataatgaacatagcg- |
444 |
Q |
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| T |
5808642 |
cttattattcttcag------------------gaaggtgatcgaagtttggaggaactacaggctcggactgcgctgctcaatataatgaacatagagg |
5808561 |
T |
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| Q |
445 |
---gatatcaatatgctaataacttatccaagaaaaggaaagccatcagtatgctt |
497 |
Q |
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| T |
5808560 |
atcgatatcaatatgctaataacttatccaagaaaaggaaagccatcagtatgctt |
5808505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 99 - 278
Target Start/End: Original strand, 38611616 - 38611795
Alignment:
| Q |
99 |
ttccttccattcatgtttgttggctcgaaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagta |
198 |
Q |
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| T |
38611616 |
ttcctttcactcatgtttgatggcttaaaaccgtgcagattaaaaaattaaaattgccaatgaagtttggaaatcatagaggctttgcttttgtggagta |
38611715 |
T |
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| Q |
199 |
tgttacccagcaggaggcacaaagtgctcttacagctctctcaagcacccaattgtatggcagacatcttgtaagtgaaa |
278 |
Q |
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| T |
38611716 |
tgttactcagcaggaggcacaaaatgctcttacagcactctcaagcacccacttgtatggcagacatctggtaagtgaaa |
38611795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 135 - 280
Target Start/End: Complemental strand, 37735436 - 37735291
Alignment:
| Q |
135 |
agattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgctcttacagc |
234 |
Q |
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| T |
37735436 |
agattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgcacttacagc |
37735337 |
T |
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| Q |
235 |
tctctcaagcacccaattgtatggcagacatcttgtaagtgaaact |
280 |
Q |
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| T |
37735336 |
actctcaagtacccacttgtatggcagacatctggtaagtgaaact |
37735291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 37750914 - 37750760
Alignment:
| Q |
126 |
aaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgc |
225 |
Q |
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| T |
37750914 |
aaaccgtgcagattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgc |
37750815 |
T |
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| Q |
226 |
tcttacagctctctcaagcacccaattgtatggcagacatcttgtaagtgaaact |
280 |
Q |
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| T |
37750814 |
acttacagcactctcaagtacccacttgtatggaagacatctggtaagtgaaact |
37750760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 494
Target Start/End: Complemental strand, 37735173 - 37735043
Alignment:
| Q |
356 |
ttcaggtgatagagagagcgaaagaaggtgatcgaagtttggaggaactacaggctcggactgcgctgctcaatataatgaacatagcggatatcaatat |
455 |
Q |
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| T |
37735173 |
ttcaggtaatagagagagcgaaagaaggtga---gagtttggaggaactgcgggctcgaact--gctgctcaatttaatgaacatagtggatttcaa--- |
37735082 |
T |
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| Q |
456 |
gctaataacttatccaagaaaaggaaagccatcagtatg |
494 |
Q |
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| T |
37735081 |
gatactaacttatccaagaaaaggaagggcatcagtatg |
37735043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 494
Target Start/End: Original strand, 38611916 - 38612046
Alignment:
| Q |
356 |
ttcaggtgatagagagagcgaaagaaggtgatcgaagtttggaggaactacaggctcggactgcgctgctcaatataatgaacatagcggatatcaatat |
455 |
Q |
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| T |
38611916 |
ttcaggtgattgagagagcaaaagaaggtgag---agtttgaaggaactgcgagctagaactgc--tgctcaatttaatgaacatagtggatttcaagat |
38612010 |
T |
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| Q |
456 |
gctaataacttatccaagaaaaggaaagccatcagtatg |
494 |
Q |
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|||| |||||||||||||||||| |||||||||||| |
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| T |
38612011 |
actaa---cttatccaagaaaaggaaggccatcagtatg |
38612046 |
T |
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