View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10993_high_1_N (Length: 347)
Name: NF10993_high_1_N
Description: NF10993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10993_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 11379506 - 11379263
Alignment:
| Q |
7 |
gtgagatgaacaaaaagagtaggccagagctttgttcagaaggttggagggtgttggaaccaatgaagacttcttgtagtggcacaaacaactttggact |
106 |
Q |
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| T |
11379506 |
gtgatatgaacaaaaagagtaggccagagctttgttcagaaggttggagggtgttggaacctatgaaggtttcttgtagtggcacaaacaactttggact |
11379407 |
T |
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| Q |
107 |
taagtcctgtttggataaacagcttaataggacaacttgaaagtggctatgacacttcacaaaggacaaattctaagcttgtatgcaaaccatgactagt |
206 |
Q |
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| T |
11379406 |
taagtcctgtttggataaacagcttaataggacaacttgaaagtggctatgacacttcacaaaggacaaattctaagcttgtatgcaaaccatgactagt |
11379307 |
T |
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| Q |
207 |
ttcatagtcaccctgtcaaaaaccagccattttttgtcttctcat |
251 |
Q |
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| T |
11379306 |
ttcatagtca-cctgtcaaaaaccagccattttttgtcttctcat |
11379263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 11379254 - 11379191
Alignment:
| Q |
284 |
atatatatttagtttctagcagatatagttgtgattacaaattgttcattccctcagtttttta |
347 |
Q |
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| T |
11379254 |
atatatatttagtttctagcagatatagttgtgattacaaattgttcattccctcagtttttta |
11379191 |
T |
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