View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_high_16 (Length: 491)
Name: NF10994_high_16
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 7976686 - 7977148
Alignment:
| Q |
11 |
cacagacaagattgttgtatgttgaggatccaatttctttgtttggtgctcttaaaactcgaaatataactccagtgacagttttcagaggggatcttga |
110 |
Q |
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| T |
7976686 |
cacagacaagattgttgtatgttgaggatccaatttctttgtttggtgctcttaaaactcgaaatataactccagtgacagttttcagaggggatcttga |
7976785 |
T |
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| Q |
111 |
attgagcccaaaactgaggattaaggtaagatttgcaatatgatatgtagatttagtctccaggtccttaacgaatatcttatttaagtgtacctatcat |
210 |
Q |
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| T |
7976786 |
attgagcccaaaactgaggattaaggtaagatttgcaatatgatatgtagatttagtctccaggtccttaacgaatatcttgtttaagtgtacctatcat |
7976885 |
T |
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| Q |
211 |
agttggttaactgtctttcattttgcaagtttttccattaatgattttcaaatgctacaagcttgagttggttatagacaatatgaatctttatctttat |
310 |
Q |
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| T |
7976886 |
agttggttaactgtctttcattttgcaagtttttccattaatgattttcaaatgctacaagcttgagttggttatagacaatatgaatctttatctttat |
7976985 |
T |
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| Q |
311 |
attgaataatttaaggcacggtgaacacatgtgaaggcatctttgatgnnnnnnncccttcatcttaatgtttaacagaatattttatttgtattaccta |
410 |
Q |
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| T |
7976986 |
attgaataatttaaggcacggtgaacacatgtgaaggcatctttgatgttgttttcccttcatcttaatgtttaacagaatattttatttgtattaccta |
7977085 |
T |
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| Q |
411 |
tcaaattttcctttttaaataaaccggtgatttgtatgaaaagacattttattttcatgaaac |
473 |
Q |
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| T |
7977086 |
tcaaattttcctttttaaataaagcggtgatttgtatgaaaagacattttattttcatgaaac |
7977148 |
T |
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