View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_high_17 (Length: 453)
Name: NF10994_high_17
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 2564060 - 2564472
Alignment:
| Q |
17 |
agttcaaacattactaacacaggtctttatatttacagatacatataacaaactaatgatcttttactaaacattagt---tccaaagaaagaattaact |
113 |
Q |
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| T |
2564060 |
agttcaaacattactaacacaggtctttatatttacacatacatataacaaactaatgatcttttactaaacattagtagttccaaagaaagaattaact |
2564159 |
T |
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| Q |
114 |
caataattttactaggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgccaggaagttact |
213 |
Q |
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| T |
2564160 |
caataattttactaggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgcaaggaagttact |
2564259 |
T |
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| Q |
214 |
ctctacagattnnnnnnnctcctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattattgatggaatgagctgaattagcat |
313 |
Q |
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| T |
2564260 |
ctctacagattaaaaaaacacctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattattgatggaatgagctgaa------- |
2564352 |
T |
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| Q |
314 |
ttgatttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaa |
413 |
Q |
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| T |
2564353 |
-----ttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaa |
2564447 |
T |
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| Q |
414 |
atcctaaacaaaaatcatattgatg |
438 |
Q |
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| T |
2564448 |
atcctaaacaaaaataatattgatg |
2564472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 2574246 - 2574367
Alignment:
| Q |
317 |
atttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatc |
416 |
Q |
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||||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2574246 |
atttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatc |
2574345 |
T |
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| Q |
417 |
ctaaacaaaaatcatattgatg |
438 |
Q |
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| T |
2574346 |
ttaaacaaaaaccatattgatg |
2574367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 2574055 - 2574148
Alignment:
| Q |
127 |
aggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgccaggaagttactctctaca |
220 |
Q |
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| T |
2574055 |
aggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctaca |
2574148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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