View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_high_2 (Length: 737)

Name: NF10994_high_2
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_high_2
NF10994_high_2
[»] chr8 (1 HSPs)
chr8 (20-724)||(33713428-33714153)


Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 20 - 724
Target Start/End: Complemental strand, 33714153 - 33713428
Alignment:
Q  20 atcgaatgtaatcagaagtgtggcatgtcacaaaatattctgataagttcatattactgcattatccacttaaaaagttataaaattttgttatcaatat 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  33714153 atcgaatgtaatcagaagtgtggcatgtcacaaactattctgataagttcatattactgcattatccacttaaaaagttatcaaactttgttatcaatat 33714054  T
Q  120 tcaaataacaattctaaataagaagaagaagaa------caaaccaaggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgacgccat 213  Q
     ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33714053 acaaataacaattctaaataagaagaagaagaagaagaacaaaccaaggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgaggccat 33713954  T
Q  214 ttcaaaatgaagcttattaacaatgcgttctgaatcagacattacagcttcagtgtacttctcttcttgctccatgtaaacgtccatgtgccgcatcgct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33713953 ttcaaaatgaagcttattaacaatgcgttctgaatcagacattacagcttcagtgtacttctcttcttgctccatgtaaacgtccatgtgccgcatcgct 33713854  T
Q  314 actttgtcgctgaggcttgacatccagctgtaaggttcctcccatgttactccatggaaggagaaattttgaggcttctttggtgcttttggaggggttg 413  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33713853 actttgtcgttgaggcttgacatccagctgtaaggatcctcccatgttactccatggaaggagaaattttgaggcttctttggtgcttttggaggggttg 33713754  T
Q  414 gcgttggtgacggtggtggcttcttcgccgccttgtagtggcggaggagatggtggttgttgcggcgggtgacggcggggaaacggaatagaaggtgcat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33713753 gcgttggtgacggtggtggcttcttcgccgccttgtagtggcggaggagatggtggttgttgcggcgggtgacggcggggaaacggaatacaaggtgcat 33713654  T
Q  514 cacggt---gtggtttttgggatttagtgggtgtgtttagagaagggtttaagatttaagggaaaaacatcatttttaaatcaattcaaccaaataagca 610  Q
    ||| ||   |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  33713653 cactgtgtggtggttgttgggatttagtgggtgtgtttagagaagggttttagatttaagggaaatacatcatttttaaataaattcaaccaaataagca 33713554  T
Q  611 tccaacttaatcaaattcattaaataaccaatataact------------nnnnnnnnctatcgtaacatgtgcatgtgtatctaagacaaggagagttc 698  Q
    ||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||| |||| | |    
T  33713553 tccaacttaatcaaattcattaaataaccaatataactaaaaaaaaaaaaaaaaaaaaatatcgtaacatgtgcatgtgtatctaagacaaagagaatcc 33713454  T
Q  699 ccatgttagctaaaacggaaaggttc 724  Q
    |||||||||||||||||||| |||||    
T  33713453 ccatgttagctaaaacggaatggttc 33713428  T

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