View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10994_high_28 (Length: 368)
Name: NF10994_high_28
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 44631301 - 44630948
Alignment:
| Q |
1 |
tcatcaactcaacaagatacaggatacaaagtttgagtatgagaattatatcatgcaagaaattcagacgatttcgaccaaacatttatatacaagccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44631301 |
tcatcaactcaacaagatacaggatacaaagtttgagtatgagaattatatcatgcaagaaattcaaacgatttcgaccaaacatttatatacaagccac |
44631202 |
T |
|
| Q |
101 |
atacaggcagaagtcttcacggaaacctggtaacctccaatccttggacacactctagttgtaaaataaacactaaaagtatatcgaacacgtcacgaca |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631201 |
atataggcagaagtcttcacggaaacctggtaacctccaattcttggacacactctagttgtaaaataaacactaaaagtatatcgaacacgtcacgaca |
44631102 |
T |
|
| Q |
201 |
tagtcctcaacaacagaaagatcgatatttcatgccaatacaaatcctagaaacctctactataggatttcttgttcaactggtacattcatgcataata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
44631101 |
tagtcctcaacaacagaaagatcgatatttcatgccaatacaaatcctagaaacctctactataggatatcttgtttaactggtacattcatgcataata |
44631002 |
T |
|
| Q |
301 |
attaagaagtgaagcagattacgattcaatgaagggaatgtgtgatgcaagtat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631001 |
attaagaagtgaagcagattacgattcaatgaagggaatgtgtgatgcaagtat |
44630948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 289
Target Start/End: Original strand, 44637595 - 44637832
Alignment:
| Q |
53 |
atgcaagaaattcagacgatttcgaccaaacatttatatacaagccacatacaggcagaagtcttcacggaaacctggtaacctccaatccttggacaca |
152 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| | ||||| ||| || || || |||||||||||| |||| ||| |||||||||||| |||||||||| |
|
|
| T |
44637595 |
atgcaagaaattcaaatgatttcgaccaaacactggtatacgagctacgtatagacagaagtcttcatggaatccttgtaacctccaattcttggacaca |
44637694 |
T |
|
| Q |
153 |
ctctagttgtaaaataaacactaaaagtatatcgaa-cacgtcacgacatagtcctcaacaacagaaagatcgatattt-catgccaatacaaatcctag |
250 |
Q |
| |
|
|| | | ||| |||||||| ||||| |||||||| | | ||| |||||||||||| ||| || | | | || ||| ||||||| |||||||||||| |
|
|
| T |
44637695 |
ttccaatggtataataaacaataaaaacatatcgaaccccatcatgacatagtcctcgacaggag-aggtgccatgtttacatgccagtacaaatcctag |
44637793 |
T |
|
| Q |
251 |
aaacctctactataggatttcttgttcaactggtacatt |
289 |
Q |
| |
|
||||||||||||||| |||| ||||| ||| |||||||| |
|
|
| T |
44637794 |
aaacctctactatagtatttattgttaaacgggtacatt |
44637832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 44652629 - 44652524
Alignment:
| Q |
161 |
gtaaaataaacactaaaagtatatcgaa-cacgtcacgacatagtcctcaacaacagaaagatcgatatttcatgccaatacaaatcctagaaacctcta |
259 |
Q |
| |
|
|||||| ||||| || || ||||||||| || ||||||||||||||||||||| ||| | ||| | ||||||||||||| |||| ||||||||||| |
|
|
| T |
44652629 |
gtaaaacaaacagtacaaatatatcgaaacatatcacgacatagtcctcaacaagagagaaatcaaattttcatgccaataaaaatgttagaaacctctg |
44652530 |
T |
|
| Q |
260 |
ctatag |
265 |
Q |
| |
|
|||||| |
|
|
| T |
44652529 |
ctatag |
44652524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 44681646 - 44681524
Alignment:
| Q |
161 |
gtaaaataaacactaaaagtatatcgaa-cacgtcacgacatagtcctcaacaacagaaagatcga-tatttcatgccaatacaaatcctagaaacctct |
258 |
Q |
| |
|
|||||| ||||| || || ||||||||| || ||||| ||||||||||||||| ||| | ||| | | ||||||||||||| ||||| |||||||||| |
|
|
| T |
44681646 |
gtaaaacaaacagtacaaatatatcgaaacatatcacggcatagtcctcaacaagagagaaatcaaatttttcatgccaataaaaatctcagaaacctct |
44681547 |
T |
|
| Q |
259 |
actataggatttcttgttcaact |
281 |
Q |
| |
|
|||||| ||||||||| |||| |
|
|
| T |
44681546 |
gctatagattttcttgtttaact |
44681524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 44691451 - 44691419
Alignment:
| Q |
68 |
acgatttcgaccaaacatttatatacaagccac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
44691451 |
acgatttctaccaaacatttatatacaagccac |
44691419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University