View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_high_36 (Length: 322)
Name: NF10994_high_36
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 42968600 - 42968297
Alignment:
| Q |
19 |
ctaaattgggtattacctttacttttgccacatggaattgggatttggagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaaga |
118 |
Q |
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| T |
42968600 |
ctaaattgggtattacctttacttttgccacatggaattgggatttggagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaaga |
42968501 |
T |
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| Q |
119 |
tgctcaatatgactgactgttatgtgcttttttcaacagttggagatggttgcatgacagaaaagaacagctttattagcagatatgctcaatcatccat |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
42968500 |
tgctcaatatgactgattgttatgtgcttttttcaacagttggagatggttgcatgacaggaaagaacagctttattagcagatatgctcaaccatccat |
42968401 |
T |
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| Q |
219 |
gcttgggttgggtgggtgctccatggattgt-----gacaattcactagttccacagtgtatggtattggacataaaactgaatgtctcaaggcctttgc |
313 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42968400 |
gcttgggttgggtgggtgctccatggattgtgacatgacaattcactagttccacagtgtatggtattggacataaaactgaatgtctcaaggcctttgt |
42968301 |
T |
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| Q |
314 |
ttct |
317 |
Q |
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|||| |
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| T |
42968300 |
ttct |
42968297 |
T |
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