View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_high_52 (Length: 242)

Name: NF10994_high_52
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_high_52
NF10994_high_52
[»] chr2 (1 HSPs)
chr2 (1-227)||(17445651-17445877)
[»] chr6 (9 HSPs)
chr6 (10-227)||(33414338-33414552)
chr6 (14-227)||(33383799-33384009)
chr6 (21-227)||(33292802-33293005)
chr6 (14-178)||(31565115-31565279)
chr6 (59-227)||(33269359-33269525)
chr6 (21-92)||(33258099-33258170)
chr6 (10-105)||(33351435-33351529)
chr6 (107-216)||(33394918-33395025)
chr6 (65-107)||(31567426-31567468)
[»] scaffold0428 (1 HSPs)
scaffold0428 (21-92)||(2220-2291)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17445877 - 17445651
Alignment:
Q  1 cactttaaactctccaatagcagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagagcaagctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17445877 cactttaaactctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtcatccttaatgaaaggctgctctagaagagcaagctct 17445778  T
Q  101 cctaacctctttgagatccttccctcgacaattttctctcttatattctcgggtttcgaagaaaggtcttccctctgctgcatctcaagttctttttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17445777 cctaacctctttgagatccttccctcgacaattttctctcttatattctcgggtttcgaagaaaggtcttccctctgctgcatctcaagttctttttcct 17445678  T
Q  201 tcttcacaatggtttcgggaatatctt 227  Q
    |||||||||||||||||||||||||||    
T  17445677 tcttcacaatggtttcgggaatatctt 17445651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 33414338 - 33414552
Alignment:
Q  10 ctctccaatagcagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagagcaagctctcctaacctc 109  Q
    ||||||||||||||||||||||||||||||||| | |||||||  ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33414338 ctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtcatccttaataaaaggctgctctagaagagcaagctctcctaacctc 33414437  T
Q  110 tttgagatccttccctcgacaattttctctcttatattctcgggtttcgaagaaaggtcttccctctgctgcatctcaagttctttttccttcttcacaa 209  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||| |||| ||||||||| ||    |||||||||||||||||||||||| ||||||    
T  33414438 tttgagattcttccctcgacaattttctctctaatgttctcgggttttgaagcaaggtcttctct---ttgcatctcaagttctttttccttcgtcacaa 33414534  T
Q  210 tggtttcgggaatatctt 227  Q
    | ||||||||||||||||    
T  33414535 tagtttcgggaatatctt 33414552  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 33383799 - 33384009
Alignment:
Q  14 ccaatagcagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagagcaagctctcctaacctctttg 113  Q
    ||||| ||||||||||||||||||||||| | |||||||||||  ||||||||||||||||||||||||| || |||||| || |||  |||||||||||    
T  33383799 ccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatgaaaggctgctttataagagcgagatctggtaacctctttg 33383898  T
Q  114 agatccttccctcgacaattttctctcttatattctcgggtttcgaagaaaggtcttccctctgctgcatctcaagttctttttccttcttcacaatggt 213  Q
    |||| |||||||| |||||||||||| |||| |||||||||||| ||| ||||||||| ||   ||||| ||||||||||||||||||| ||||||||||    
T  33383899 agattcttccctcaacaattttctctgttatgttctcgggtttcaaagcaaggtcttctct---ctgcaactcaagttctttttccttcgtcacaatggt 33383995  T
Q  214 ttcgggaatatctt 227  Q
    |||  |||||||||    
T  33383996 ttcaagaatatctt 33384009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 33292802 - 33293005
Alignment:
Q  21 cagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatcct 120  Q
    ||||||||||||||||| |||| | |||||  ||||  |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  121 tccctcgacaattttctctcttatattctcgggtttcgaagaaaggtcttccctctgctgcatctcaagttctttttccttcttcacaatggtttcggga 220  Q
    |||||| ||||||||||||||||| |||||||||||| ||| ||||||||| ||    ||||||| ||||||||||||||||   |||||||||| | ||    
T  33292902 tccctcaacaattttctctcttatgttctcgggtttcaaagcaaggtcttctct---ttgcatcttaagttctttttccttcgcgacaatggttttgaga 33292998  T
Q  221 atatctt 227  Q
    |||||||    
T  33292999 atatctt 33293005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 31565279 - 31565115
Alignment:
Q  14 ccaatagcagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagagcaagctctcctaacctctttg 113  Q
    ||||| ||||||||||||||||||||||| | ||| ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31565279 ccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttg 31565180  T
Q  114 agatccttccctcgacaattttctctcttatattctcgggtttcgaagaaaggtcttccctctgc 178  Q
    |||| |||||||| |||||||| |||||| | ||||||| ||| |||| ||||||||| ||||||    
T  31565179 agattcttccctcaacaattttttctcttctgttctcggcttttgaagcaaggtcttctctctgc 31565115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 33269359 - 33269525
Alignment:
Q  59 ctgtcatccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctc-gacaattttctctcttatattctcgggtttc 157  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  33269359 ctgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctcagacaattttctctctaatgttctcgggtttc 33269458  T
Q  158 gaagaaaggtcttccctctgctgcatctcaagttctttttccttcttcacaatggtttcgggaatatctt 227  Q
     ||| ||||||||| ||    ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  33269459 aaagcaaggtcttctct---ttgcatctcaagatctttttccttcgtcacaatagtttcgggaatatctt 33269525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 33258099 - 33258170
Alignment:
Q  21 cagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagag 92  Q
    ||||||||||| |||||||||| | |||||||||||  |||||||||||||||||||||| |||||||||||    
T  33258099 cagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 33351435 - 33351529
Alignment:
Q  10 ctctccaatagcagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagagcaagctctcctaa 105  Q
    |||||||||| |||||||||||||||||||||| | |||||||  ||  ||||| |||||||| ||||| ||| ||||||||||||||||||||||    
T  33351435 ctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-aaaggatgccctagaagagcaagctctcctaa 33351529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 33394918 - 33395025
Alignment:
Q  107 ctctttgagatccttccc-tcgacaattttctctcttatattctcgggtttcgaagaaaggtcttccctctgctgcatctcaagttctttttccttcttc 205  Q
    ||||||||||| |||||| || || |||||||||||||| ||| |||||||| ||| ||||||||| ||   || |||||| ||||||||||||||| ||    
T  33394918 ctctttgagattcttcccctcaactattttctctcttatgttcccgggtttcaaagcaaggtcttctct---ctacatctcgagttctttttccttcgtc 33395014  T
Q  206 acaatggtttc 216  Q
     ||||||||||    
T  33395015 gcaatggtttc 33395025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 31567468 - 31567426
Alignment:
Q  65 tccttaatgaaaggctgctctagaagagcaagctctcctaacc 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaacc 31567426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 2220 - 2291
Alignment:
Q  21 cagctatactttgcctcaccaaatatttcactgaaaagctgtcatccttaatgaaaggctgctctagaagag 92  Q
    ||||||||||| |||||||||| | |||||||||||  |||||||||||||||||||||| |||||||||||    
T  2220 cagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagag 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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