View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_high_54 (Length: 233)

Name: NF10994_high_54
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_high_54
NF10994_high_54
[»] chr3 (10 HSPs)
chr3 (19-224)||(4582485-4582690)
chr3 (19-211)||(5155190-5155382)
chr3 (21-114)||(4614258-4614352)
chr3 (19-150)||(46469612-46469743)
chr3 (86-213)||(46490021-46490148)
chr3 (63-222)||(46478256-46478415)
chr3 (29-132)||(51942034-51942137)
chr3 (29-218)||(16023879-16024068)
chr3 (136-216)||(47398309-47398389)
chr3 (168-224)||(47414945-47415001)
[»] chr4 (3 HSPs)
chr4 (29-215)||(35160451-35160637)
chr4 (29-183)||(35154060-35154214)
chr4 (31-183)||(15555004-15555156)
[»] chr8 (2 HSPs)
chr8 (19-183)||(9693405-9693569)
chr8 (38-216)||(9677631-9677809)
[»] chr2 (2 HSPs)
chr2 (19-183)||(20154346-20154510)
chr2 (19-216)||(20143441-20143638)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 4582690 - 4582485
Alignment:
Q  19 atcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582690 atcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaa 4582591  T
Q  119 gttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4582590 gttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaactcctttg 4582491  T
Q  219 cttctc 224  Q
    ||||||    
T  4582490 cttctc 4582485  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 5155190 - 5155382
Alignment:
Q  19 atcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaa 118  Q
    ||||||||| ||||||||||| ||||||||  | ||||||||| |||| ||||  ||||||| ||| ||||||||||||||||| ||||| || || |||    
T  5155190 atcaatcaccaaccaaacaaatgtttccctacgcatcgccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaa 5155289  T
Q  119 gttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaac 211  Q
    ||||  || ||||| ||||||||||||||||| || ||||||  | ||||||||||||||||||| || || ||||| ||||| |||||||||    
T  5155290 gttgtactaagcatcatcgctgctggctctgagggtcccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaac 5155382  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 4614352 - 4614258
Alignment:
Q  21 caatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtg-ttttccccactttcgct 114  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4614352 caatcagtaaccagacaaaagtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacattgtgtttttccccactttcgct 4614258  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 46469612 - 46469743
Alignment:
Q  19 atcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaa 118  Q
    ||||||||| |||||||| ||||||||||| |  || |||||| |||||||||||||||||||||| |||||| |||||||||| || || || ||||||    
T  46469612 atcaatcaccaaccaaaccaaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactccaa 46469711  T
Q  119 gttgcgctcagcatgatcgctgctggctctga 150  Q
    |||  ||||| |||  ||||||||| ||||||    
T  46469712 gttatgctcaacattgtcgctgctgcctctga 46469743  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 46490021 - 46490148
Alignment:
Q  86 aagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttc 185  Q
    |||||||||||||| || |||||||||||||||||||  |||||||| ||||||||||||||||||||  |||||  | |||||||||| |||||||| |    
T  46490021 aagaacattgtgttatcgccactttcgctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcctcc 46490120  T
Q  186 tctctaaatcaactgatcatctcaactc 213  Q
      ||||| || || ||||| ||||||||    
T  46490121 aatctaactccaccgatcaactcaactc 46490148  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 46478256 - 46478415
Alignment:
Q  63 atctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacggacccacaag 162  Q
    |||||||||| ||||||||||| || ||||| |||||||| |||||||| |||||||||| ||| || || |||||| |||| ||||| || |||||       
T  46478256 atctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtcccactca 46478355  T
Q  163 agaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttc 222  Q
    | |||| ||| || |||||||||  || ||||| || ||||||||||||| ||| |||||    
T  46478356 acaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcgcttc 46478415  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 51942034 - 51942137
Alignment:
Q  29 aaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctca 128  Q
    |||||||||  |||||||||||||||||||||| || | ||||||||| ||||||| || ||||| || ||||| ||| | || || ||||||| |||||    
T  51942034 aaccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctca 51942133  T
Q  129 gcat 132  Q
    ||||    
T  51942134 gcat 51942137  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 16023879 - 16024068
Alignment:
Q  29 aaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctca 128  Q
    |||||||| || || |||||||  |||| |||| ||||||| |||||| ||||||| || |||||  ||||||| || || || || |||||||  ||||    
T  16023879 aaccaaaccaacgtatccctcaacatcgtcaaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctca 16023978  T
Q  129 gcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttg 218  Q
    || | ||||||||||| || || ||||| |||  | ||||||||||| ||||||| | |||  |||| ||  || |||||||||||||||    
T  16023979 gccttatcgctgctggatccgagggaccgacacaacaacagcttctccacttcctccgctccgaatctaccaataatctcaactcctttg 16024068  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 47398389 - 47398309
Alignment:
Q  136 cgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctt 216  Q
    ||||||||||||||| || ||||||  | || |||||||||||||||||   || || || ||||| ||||||||||||||    
T  47398389 cgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactcctt 47398309  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 47415001 - 47414945
Alignment:
Q  168 agcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctc 224  Q
    ||||||||||||||||   ||| ||||| | ||||||||||||||||||||| ||||    
T  47415001 agcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcctctc 47414945  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 35160451 - 35160637
Alignment:
Q  29 aaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctca 128  Q
    |||||||| |||||||| ||||  || | |||| |||||||||| ||||||||||| |||||||| |||||||| ||| | || |||||||||| |||||    
T  35160451 aaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctca 35160550  T
Q  129 gcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcct 215  Q
    |||| ||| ||||||||||||| ||  | |||  | |||||||||| |||||||| |  |  ||||| |||||||||||||||||||    
T  35160551 gcataatcactgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcct 35160637  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 35154060 - 35154214
Alignment:
Q  29 aaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctca 128  Q
    ||||| || |||||||||||||  ||||||||| |||| |||||||| |||||||| ||||| || |||||||| ||  | || |||||||| | |||      
T  35154060 aaccatacgaaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtctctccaagtagtgcttg 35154159  T
Q  129 gcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttcct 183  Q
      || ||||||||||||||||||||  ||||| || ||||||||||| |||||||    
T  35154160 caatcatcgctgctggctctgacggttccacacgacaacagcttctcaacttcct 35154214  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 15555004 - 15555156
Alignment:
Q  31 ccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagc 130  Q
    |||||| || ||||| |||| |||||| ||| |||||||||| ||| || |  | || |||||||||||||| || || ||| | ||||||   ||||||    
T  15555004 ccaaaccaacgtttcactcaaaatcgctaaacatctcttctctaaacaacccaacaacaacattgtgttttcacctctctcgattcaagttattctcagc 15555103  T
Q  131 atgatcgctgctggctctgacggacccacaagagaacagcttctcgacttcct 183  Q
    || ||||||||||||||||| ||  |||||    |||| ||||||||||||||    
T  15555104 atcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcct 15555156  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 9693569 - 9693405
Alignment:
Q  19 atcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaa 118  Q
    ||||| ||| |||||| | ||| |||||||||  ||||||||| |||||||||||||||||||||| |||||  | || ||||| ||| | || ||||||    
T  9693569 atcaagcaccaaccaagcgaaattttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaa 9693470  T
Q  119 gttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttcct 183  Q
    ||||  |||||||| ||||||| |||||||||||| || ||   | |||||||||| ||||||||    
T  9693469 gttgttctcagcatcatcgctgttggctctgacggtcctactcaacaacagcttcttgacttcct 9693405  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 9677809 - 9677631
Alignment:
Q  38 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 137  Q
    |||||||||||||   |||||||| |||||||||||||||||||||| || ||| | || ||||| ||| | || ||||||||||  ||||| || ||||    
T  9677809 aaagtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcg 9677710  T
Q  138 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctt 216  Q
    ||||||||||||| || || ||   | ||||||||||||||||||| |  |  ||||| |  |||||||||||||||||    
T  9677709 ctgctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactcctt 9677631  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 20154346 - 20154510
Alignment:
Q  19 atcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaa 118  Q
    ||||||||| ||||||| ||| |||| ||||   ||||||||| |||| ||||  ||| ||||||| ||||||||||||||||| ||| | || ||||||    
T  20154346 atcaatcaccaaccaaataaaggttttcctcgacatcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaa 20154445  T
Q  119 gttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttcct 183  Q
    |||| | ||||| | | ||||||||||||||| || ||||||  | |||||||| ||||||||||    
T  20154446 gttgtgttcagcctcaccgctgctggctctgaaggtcccacacaacaacagcttgtcgacttcct 20154510  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 20143441 - 20143638
Alignment:
Q  19 atcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaa 118  Q
    ||||||||||||||||||||| |||||||||   ||||||| | |||| || |  ||| ||||||| |||||||| |||||||| ||||| || ||||||    
T  20143441 atcaatcactaaccaaacaaaggtttccctcgacatcgccagacatctgttgttgaaacaatcagacaagaacatcgtgttttcgccactatcactccaa 20143540  T
Q  119 gttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctt 216  Q
     ||| ||||||| | ||||||||||| ||||| |  ||||||  | |||| ||| |||||||||| | ||  ||||| ||  ||||||| ||||||||    
T  20143541 attgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttgtcgacttcctccgcttcaaatccaccaatcatcttaactcctt 20143638  T

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