View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10994_high_7 (Length: 620)
Name: NF10994_high_7
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 127 - 609
Target Start/End: Complemental strand, 47709946 - 47709477
Alignment:
| Q |
127 |
gagtttgaggttagtgtggagaagagaaaaaataaagtatatttcacttcagtcaaggttggcatcagcttggaactcactataaactcattttaccatg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709946 |
gagtttgaggttagtgtggagaagagaaaaaataaagtatatttcacttcactcaaggttggcatcagcttggaactcactataaactcattttaccatg |
47709847 |
T |
|
| Q |
227 |
gcttttttaagttccaacatgttgattataaaagtaagctagggatagatttggagttgaaagtatgtataaactcannnnnnnatgtttaggattgagg |
326 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47709846 |
gcttttttaagttccaaaatgttgattataaaagttagctagggatagatttggagttgaaagtatgtataaactca-ttttttatgtttaggattgagg |
47709748 |
T |
|
| Q |
327 |
gcaaaaataaacatgtaaaaggaatttttcttcattgttaatttgttcaaagacattgactgctattgatg---tattattagactttctggtatgctat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47709747 |
gcaaaaataaacatgtaaaaggaatttttcttca--------ttgttcaaagacattgactgctattgatgtattattattagactttctggtatgctat |
47709656 |
T |
|
| Q |
424 |
tttcttgttgtagatattgttcaaagatattctgaattgtcaatgactgtggatccatccaacacaacagccttgcacactgctgttctagcagttgctt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47709655 |
tttcttgttgtagatattgttcaaagatattctgaattgtcaat-------gatccatccaacacaacagccttgcaaactgctgttctagcagttgctt |
47709563 |
T |
|
| Q |
524 |
gttttgtttggagttttctctcctatatcatatctttctaggtcaccttgcacatcttgtattgggtttatcagttttctctgctc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709562 |
gttttgtttggagttttctctcctatatcatatctttctaggtcaccttgcacatcttgtattgggtttatcagttttctctgctc |
47709477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 47710089 - 47709981
Alignment:
| Q |
18 |
atctgatcttatattaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatcc |
117 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710089 |
atctgatcttatattaccctatgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatcc |
47709990 |
T |
|
| Q |
118 |
aaaatcatg |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
47709989 |
aaaatcatg |
47709981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 508
Target Start/End: Complemental strand, 23033342 - 23033286
Alignment:
| Q |
452 |
attctgaattgtcaatgactgtggatccatccaacacaacagccttgcacactgctg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||| |
|
|
| T |
23033342 |
attctgaattgtcaatgactgtggatccatccaacaccaccgccttacacacagctg |
23033286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 39492555 - 39492447
Alignment:
| Q |
18 |
atctgatcttatattaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatcc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39492555 |
atctgatcttatattaccctgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatcc |
39492456 |
T |
|
| Q |
118 |
aaaatcatg |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
39492455 |
aaaatcatg |
39492447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 35839705 - 35839813
Alignment:
| Q |
18 |
atctgatcttatattaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatcc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35839705 |
atctgatcttatattaccctgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatcc |
35839804 |
T |
|
| Q |
118 |
aaaatcatg |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
35839805 |
aaaatcatg |
35839813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 41066310 - 41066265
Alignment:
| Q |
455 |
ctgaattgtcaatgactgtggatccatccaacacaacagccttgca |
500 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
41066310 |
ctgaattgtcaatgacagtggatccatcaaacacaacagctttgca |
41066265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 18184970 - 18185010
Alignment:
| Q |
389 |
ctattgatgtattattagactttctggtatgctattttctt |
429 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
18184970 |
ctattgatatattatcagactttctggtatgctattttctt |
18185010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University