View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10994_low_1 (Length: 795)
Name: NF10994_low_1
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 686
Target Start/End: Complemental strand, 4488855 - 4488186
Alignment:
| Q |
18 |
aaactgtagaatagttttttggccatgtataaagttatcacttatcagcatgataggaatagtaattacatggctaactctaatatttttcatataacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488855 |
aaactgtagaatagttttttggccatgtataaagttatcacttatcagcatgataggaatagtaattacatggctaactctaatatttttcatataacaa |
4488756 |
T |
|
| Q |
118 |
atgattttattatacataagtgactatagctatannnnnnnnnnnnnnnnaagaagtgactatagctgttatgatatagccgtggaagattttacaagat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488755 |
atgattttattatacataagtgactatagctatatttttatttctttttcaagaagtgactatagctgttatgatatagccgtggaagattttacaagat |
4488656 |
T |
|
| Q |
218 |
tattttttagttatgataattcaacatttttgtacttgcagtgggaaattttctcccaatttcacaagtgtgtgacgatgttgcagctacgtacaaaaag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4488655 |
tattttttagttatgataattcaacatttttgtacttgcagtgggaaattttctcccaatttcacaagtgtgtgatgatgttgcagctacatacaaaaag |
4488556 |
T |
|
| Q |
318 |
gaaatagagttggagacaaatcaaatgtttctacttttta-gaaaatgtgtgagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488555 |
gaaatagagttggagacaaatcaaatgtttctaccttttaagaaaatgtgtgagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaa |
4488456 |
T |
|
| Q |
417 |
atagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488455 |
atagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcag |
4488356 |
T |
|
| Q |
517 |
aggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagc |
616 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488355 |
aggaagtgatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagc |
4488256 |
T |
|
| Q |
617 |
atttaccttgactaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4488255 |
atttaccttgactaataaagatttattatcaccaatagtgctaaaatcaaactggattcttcctcaaata |
4488186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 184 - 588
Target Start/End: Complemental strand, 1410011 - 1409606
Alignment:
| Q |
184 |
tgttatgatatagccgtggaagattttacaagattattttttagttatgataattcaacatttttgtacttgcagtgggaaattttctcccaatttcaca |
283 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
1410011 |
tgttatgatatagcaatggaagattttacaagattattatttcgttatgataattcaacatttttgtacttgcagtgggaaatatgctcccaatttcaca |
1409912 |
T |
|
| Q |
284 |
agtgtgtgacgatgttgcagctacgtacaaaaaggaaatagagttggagacaaatcaaatgtttctacttttta-gaaaatgtgtgagcagagaaaggta |
382 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||| |||||||||| ||||||||||||||| |||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
1409911 |
agtgcgtgacgatgtagcagctgcgtacaaaaaagaaatagagtgtgagacaaatcaaatgcttctaccttttaagcaaatgtgtgagcagagaaaggta |
1409812 |
T |
|
| Q |
383 |
agatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttgtagtg |
482 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1409811 |
agatattgttcttcatgaagattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttgtagtg |
1409712 |
T |
|
| Q |
483 |
attgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttatttaaaa |
582 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1409711 |
attgaatcagatgatgtggcatctgcggtggcagaggaagtaaccaagtatgctgtaacgaaattggtcgttggagcttcaaccggtggcttatttaaaa |
1409612 |
T |
|
| Q |
583 |
ggtact |
588 |
Q |
| |
|
|||||| |
|
|
| T |
1409611 |
ggtact |
1409606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 1410146 - 1410015
Alignment:
| Q |
18 |
aaactgtagaatagttttttggccatgtataaagttatcacttatcagcatgataggaatagtaattacatggc-taactctaatatttttcatataaca |
116 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
1410146 |
aaactgtagaatatgtctttggccatgtataaagttatcacttatcagcatgacaggaatagtaattacatggcttaactctaatattttccatataaca |
1410047 |
T |
|
| Q |
117 |
aatgattttattatacataagtgactatagct |
148 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
1410046 |
aatgattttattataggtaagtgactatagct |
1410015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 627 - 686
Target Start/End: Complemental strand, 1409608 - 1409549
Alignment:
| Q |
627 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
686 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
1409608 |
actaataaagatttattatcaccaatagttctaagatcaaactgcattcttcctcaaata |
1409549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 1402874 - 1402810
Alignment:
| Q |
460 |
aggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagta |
524 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
1402874 |
aggtgcatgtagatgtagtagtgattgaatcagatgatgtagcaactgcagtagcagaggaagta |
1402810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 22622258 - 22621884
Alignment:
| Q |
18 |
aaactgtagaatagttttttggccatgtataaagttatcacttatcagcatgataggaatagtaattacatggctaactctaatatttttcatataacaa |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22622258 |
aaactgtagaatatctttttggccatgtataaagtcatcacttatcagcatgataggaatagtaattacatggctaactctaatattttccatataa--- |
22622162 |
T |
|
| Q |
118 |
atgattttattatacataagtgactatagctatannnnnnnnnnnnnnnn-aagaagtgactatagctgttatgatatagccgtggaagattttacaaga |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || ||||||||||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
22622161 |
atgattttattacacataagtgactatagctttattttgttattcttttttaagaagtgactatagttgttatcatatagcagtggaagattttacaaga |
22622062 |
T |
|
| Q |
217 |
ttattttttagttatgataattcaacatttttgtacttgcagtgggaaattttctcccaatttcacaagtgtgtgacgatgttgcagctacgtacaaaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
22622061 |
ttattttttagttatgataattcaacatttttgtacttgcagtgggaaattttctcccaatttcacaagtgtgtgacgatgttgcagctgcgtaaaaaaa |
22621962 |
T |
|
| Q |
317 |
ggaaatagagttggagacaaatcaaatgtttcta-ctttttagaaaatgtgtgagcagagaaaggtaagatattgttc |
393 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||| ||||| || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
22621961 |
ggaaatagagtgggaggcaaatcaaatgcttctaccttttaagtaaatgtgtgagcatagaaaggtaagatattgttc |
22621884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 562 - 686
Target Start/End: Complemental strand, 19023911 - 19023787
Alignment:
| Q |
562 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaag |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||| |
|
|
| T |
19023911 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatctaccttgactaataatgatttattatcaccaatagtgccaag |
19023812 |
T |
|
| Q |
662 |
atcaaactggattcttcctcaaata |
686 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
19023811 |
atcaaactggattcatcctcaaata |
19023787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 11955434 - 11955361
Alignment:
| Q |
464 |
gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgcta |
537 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||| ||| ||||| | |||||||||||| | ||| |||||| |
|
|
| T |
11955434 |
gcatgtagatattttagtgattgaataagatgatgtagcaactgcaatagcagaggaagtagttaaggatgcta |
11955361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 627 - 686
Target Start/End: Complemental strand, 14244914 - 14244855
Alignment:
| Q |
627 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
686 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14244914 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
14244855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 14244983 - 14244918
Alignment:
| Q |
184 |
tgttatgatatagccgtggaagattttacaagattattttttagttatgataattcaacatttttg |
249 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14244983 |
tgttatgatacagcagtggaagattttacaagattaatttttagttatgataattcaacatttttg |
14244918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 14245082 - 14244987
Alignment:
| Q |
52 |
ttatcacttatcagcatgataggaatagtaattacatggctaactctaatatttttcatataac-aaatgattttattatacataagtgactatagct |
148 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||| |||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
14245082 |
ttatcacttatcagcatgatatgaatagtaa--acatggttaactataatattttccatataacaaaattaacttattatacataagtgactatagct |
14244987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 627 - 686
Target Start/End: Complemental strand, 6355464 - 6355405
Alignment:
| Q |
627 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
686 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6355464 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
6355405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 6355632 - 6355537
Alignment:
| Q |
52 |
ttatcacttatcagcatgataggaatagtaattacatggctaactctaatatttttcatataac-aaatgattttattatacataagtgactatagct |
148 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||| |||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
6355632 |
ttatcacttatcagcatgatatgaatagtaa--acatggttaactataatattttccatataacaaaattaatttattatacataagtgactatagct |
6355537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 6355533 - 6355468
Alignment:
| Q |
184 |
tgttatgatatagccgtggaagattttacaagattattttttagttatgataattcaacatttttg |
249 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6355533 |
tgttatgatacagcagtggaagattttactagattaatttttagttatgataattcaacatttttg |
6355468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 563
Target Start/End: Original strand, 40682223 - 40682322
Alignment:
| Q |
464 |
gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttca |
563 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| ||| |||| | |||||||||||| ||| |||||||||| ||| | ||| ||||||||||| |
|
|
| T |
40682223 |
gcatgtagatgttttagtgattgaatcagatgatgtagcaattgcaatagcagaggaagtagctaaggatgctataaccaaacttgtccttggagcttca |
40682322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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