View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_11 (Length: 519)
Name: NF10994_low_11
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 29057175 - 29056682
Alignment:
| Q |
18 |
gaaacagcagcagaaaaatacagcaaatttctgcttcaatgactcttttctaaagtactagtactagaaaaagaatgtcagtgccacatcacgtgttggt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057175 |
gaaacaacagcagaaaaatacagcaaatttctgcttcaatgactcttttctaaagtactagtactagaaaaagaatgtcagtgccacatcacgtgttggt |
29057076 |
T |
|
| Q |
118 |
catcaaactatagtcacatggtgannnnnnnnatccagtacgaccttttaaagctaattggctgtcacatagaaaatgcatcgtttgcattaaaa-ggct |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29057075 |
catcaaactatagtcacatggtgattttttttatccagtacgaccttttaaagctaattggctgtcacatagaaaatgcatcgtttgcattaaaaaggct |
29056976 |
T |
|
| Q |
217 |
gcaaatattttatattgaatgtataaccagaattgcagtgtccaaatttagtgagtggatagtgtgattgcattgatagataaaggatcctcttgctctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056975 |
gcaaatattttatattgaatgtataaccagaattgcagtgtccaaatttagtgagtggatagtgtgattgcattgatagataaaggatcctcttgctctt |
29056876 |
T |
|
| Q |
317 |
atatcttccagtattcactattcaagaaggtgagagagtccaaagggtggtgtcaacgttatctttaannnnnnnnnnnnnnnnnnnccttcaaaaggtt |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29056875 |
atatcttccagtattcactattcaaggaggtgagagagtccaaagggtggtgtcaacgttatctttaatttttcttttaacttttttccttcaaaaggtt |
29056776 |
T |
|
| Q |
417 |
attacttttcataactggctctcatgatggccagaggatgcattgaagtttttgtgatttcggataattgaacaatggtaccacctatctctgct |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29056775 |
attacttttcataactggctctcatgatggccagaggatgcattgaag-ttttgtaatttcggataattgaacaatggtaccacctatctctgct |
29056682 |
T |
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