View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10994_low_12 (Length: 509)
Name: NF10994_low_12
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 23 - 494
Target Start/End: Complemental strand, 38089825 - 38089353
Alignment:
| Q |
23 |
gctcattcgcgatcaaattggtgaaaattcacacttgagggggaaattgtagagtttcaagcgtgagtgactaaatctcacaactcctatgaacaagtaa |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||| |
|
|
| T |
38089825 |
gctcattcgcgatcaaataggtgaaaattcacacttgaggaggaaattgtagagtttcaagcgtgagtgattaaatctcacaactcttatgaacgaataa |
38089726 |
T |
|
| Q |
123 |
aatgttggatatacaagagtgacgacacatgta--taatgccttaagatttttgatggagatgtgccgtctaatggtcttggagcaattgttccactgtt |
220 |
Q |
| |
|
||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||| |
|
|
| T |
38089725 |
aatgttggatatacaagagagacaacacatatacataatgccttaagatttttgatggagatgtgtcatcttgtaatcttggagcaattgttccactgtt |
38089626 |
T |
|
| Q |
221 |
tctcctgacactcccccagagtg---acactctccttattgaatatgtacttcatcatattttatttattagattaagggatgagtctaggtttnnnnnn |
317 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
38089625 |
tctcccgacactctcccggagtcccaacactctccttattgaacatgtacttcatcatattttatt----agattaagggtagagtctaggtttaaaaaa |
38089530 |
T |
|
| Q |
318 |
nttgaccgaatccaatgttagggttgagtgaaggcctcaaattcaacctaacccatcatttatatacccattaaggacacccataaaacacttttagcat |
417 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089529 |
attgacccaatctaatattagggttgagtgaaggcctcaaattcaacctaacccatcatttatatacccattaaggacacccataaaacacttttagcat |
38089430 |
T |
|
| Q |
418 |
ttatcatcacagtataaattgatgcctaacaaaatatgcccccatgacatctactaatacagacataacaaagaaat |
494 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089429 |
ttatcgtcacagtataaattgatgcctaacaaaatatgcccccatgacatctactaatacagacataacaaagaaat |
38089353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 2954411 - 2954370
Alignment:
| Q |
51 |
tcacacttgagggggaaattgtagagtttcaagcgtgagtga |
92 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
2954411 |
tcacacttgagggggagattgttgagtttcaagtgtgagtga |
2954370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University