View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_14 (Length: 507)
Name: NF10994_low_14
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 34 - 499
Target Start/End: Original strand, 35380 - 35845
Alignment:
| Q |
34 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
133 |
Q |
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| T |
35380 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
35479 |
T |
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| Q |
134 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35480 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
35579 |
T |
|
| Q |
234 |
gctaaactctgttggattctaccaagtattattctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
333 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35580 |
gctaaactctgttggattctaccaagtatttttctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
35679 |
T |
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| Q |
334 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35680 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
35779 |
T |
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| Q |
434 |
tttcatgtctattcttttgaaaaatgacaatttgtcacattgttttcaaactcgtatgttcatctc |
499 |
Q |
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| T |
35780 |
tttcatgtctattcttttgaaaaatgacaatttgtgacattgttttcaaactcgtatgttcatctc |
35845 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 8677325 - 8677160
Alignment:
| Q |
94 |
tttgctgttaccgctctcgttggtatactctccaatgctaccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatgg |
193 |
Q |
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||||||||||| ||||| || ||| | |||| |||||||||||||| || |||| |||||||| ||| ||||||||||| ||||||||||| | |
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| T |
8677325 |
tttgctgttactgctcttgtcggtctcgtctcaaatgctaccggttattctgcttct---aagcatgttcctttgtgggagcttatttggttctctgctg |
8677229 |
T |
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| Q |
194 |
tcgccaatttgtctatcactgccatgaattttagcctaatgctaaactctgttggattctaccaagtat |
262 |
Q |
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| T |
8677228 |
ttgccaatatatctatcaccgggatgaacttgagcctcatgctcaattccgttggattctaccaagtat |
8677160 |
T |
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